PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_058520_xkwc.t2 | ||||||||
Common Name | SOVF_058520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | G2-like | ||||||||
Protein Properties | Length: 240aa MW: 26873.6 Da PI: 8.9718 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 91 | 145 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Sp_058520_xkwc.t2 91 KPRLRWTADLHERFVDAVTQLGGPNKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 145 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.999 | 88 | 148 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-31 | 88 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-24 | 91 | 145 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.17E-17 | 91 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.3E-8 | 93 | 144 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.5E-16 | 175 | 219 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
NYKRLVFGDV YGAGLLPKQV ELEKSQNVDL KFQVPDVGKA FQHQQQQQQQ QQLHESLSVM 60 AGPIDEIHQV GPTSTSAGGG DPRLVLTSDP KPRLRWTADL HERFVDAVTQ LGGPNKATPK 120 AIMRTMGVKG LTLFHLKSHL QKYRLGISGS YHLESPRTSN SSSSLPTSDM DEGFKVKEAL 180 RTQMEVQTKL HLQVEAEKHL QLRQDAERRY MAMLERACKI LAEQLMGVAI AENHAQTLQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 91 | 144 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 91 | 144 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 91 | 144 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 91 | 144 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021854523.1 | 1e-144 | protein PHR1-LIKE 2-like isoform X2 | ||||
Swissprot | Q8LAJ7 | 2e-55 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A0K9RLR9 | 1e-177 | A0A0K9RLR9_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010673278.1 | 1e-116 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 2e-54 | G2-like family protein |
Publications ? help Back to Top | |||
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