PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_058520_xkwc.t2
Common NameSOVF_058520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 240aa    MW: 26873.6 Da    PI: 8.9718
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_058520_xkwc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1062.1e-3391145155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Sp_058520_xkwc.t2  91 KPRLRWTADLHERFVDAVTQLGGPNKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 145
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.99988148IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-3188146IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-2491145IPR006447Myb domain, plants
SuperFamilySSF466897.17E-1791148IPR009057Homeodomain-like
PfamPF002495.3E-893144IPR001005SANT/Myb domain
PfamPF143798.5E-16175219IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
NYKRLVFGDV YGAGLLPKQV ELEKSQNVDL KFQVPDVGKA FQHQQQQQQQ QQLHESLSVM  60
AGPIDEIHQV GPTSTSAGGG DPRLVLTSDP KPRLRWTADL HERFVDAVTQ LGGPNKATPK  120
AIMRTMGVKG LTLFHLKSHL QKYRLGISGS YHLESPRTSN SSSSLPTSDM DEGFKVKEAL  180
RTQMEVQTKL HLQVEAEKHL QLRQDAERRY MAMLERACKI LAEQLMGVAI AENHAQTLQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1991144154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1991144154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1991144154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1991144154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854523.11e-144protein PHR1-LIKE 2-like isoform X2
SwissprotQ8LAJ72e-55PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A0K9RLR91e-177A0A0K9RLR9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010673278.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-54G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]