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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_058520_xkwc.t1 | ||||||||
Common Name | SOVF_058520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28303.2 Da PI: 8.9531 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.4e-33 | 91 | 145 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Sp_058520_xkwc.t1 91 KPRLRWTADLHERFVDAVTQLGGPNKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 145 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.203 | 88 | 148 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-31 | 88 | 146 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-16 | 91 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-24 | 91 | 146 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.8E-8 | 93 | 144 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.3E-16 | 189 | 233 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
NYKRLVFGDV YGAGLLPKQV ELEKSQNVDL KFQVPDVGKA FQHQQQQQQQ QQLHESLSVM 60 AGPIDEIHQV GPTSTSAGGG DPRLVLTSDP KPRLRWTADL HERFVDAVTQ LGGPNKATPK 120 AIMRTMGVKG LTLFHLKSHL QKYRLGKQSG KDMGEAPKDG ISGSYHLESP RTSNSSSSLP 180 TSDMDEGFKV KEALRTQMEV QTKLHLQVEA EKHLQLRQDA ERRYMAMLER ACKILAEQLM 240 GVAIAENHAQ TLQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 91 | 147 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021854522.1 | 1e-155 | protein PHR1-LIKE 2-like isoform X1 | ||||
Swissprot | Q94A57 | 9e-62 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A0K9RJS6 | 0.0 | A0A0K9RJS6_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010673278.1 | 1e-131 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 7e-62 | G2-like family protein |
Publications ? help Back to Top | |||
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