PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_057880_ijhe.t1
Common NameSOVF_057880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 481aa    MW: 52325.2 Da    PI: 8.4931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_057880_ijhe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-051941123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C++C+k F r  nL+ H r H
  Sp_057880_ijhe.t1 19 FICEICNKGFQRDQNLQLHRRGH 41
                       89*******************88 PP
2zf-C2H213.90.0001696118123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC++C+k +  +s+ k H +t+
  Sp_057880_ijhe.t1  96 YKCEKCSKIYAVQSDWKAHSKTC 118
                        9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-51841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.15E-71841No hitNo description
PROSITE profilePS5015710.8451941IPR007087Zinc finger, C2H2
SMARTSM003550.0221941IPR015880Zinc finger, C2H2-like
PfamPF121715.7E-51941IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-484117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.15E-791116No hitNo description
SMARTSM003559196116IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
PDAEVIALSP KALLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SKTEVIRKKA  60
YVCPEPSCVH HHPSRALGDL TGIKKHFCRK HGEKKYKCEK CSKIYAVQSD WKAHSKTCGT  120
REYRCDCGTL FSRKDSFITH RAFCDALAEE SARLSTNPFS NHPTLPPPQP PPFSALSSSQ  180
NPNVNASLFP FSTPSSMSLS SSPWDPTLQN PNSNPLMMHI KTENSHFSSP PHPLFFNPPP  240
IFTNHSKSYL TSMPPFSSSD TSAMSSSHFL SATALLQKAT TIGAVGNNAT MSALMNGYDE  300
LGALPSHHLG SATTTTTNDM STVLPPPQPS SSTNTNSTNN TTTTPSDDHF SAMLATWRKN  360
NDGMTRDFLG LTNVDYNTNV GGGGGGGGGG FDGDDEVVGN MLKFTSGLQY GMTGPYDRDN  420
SSSSSMLKTQ QQQQQQQQQS LVHHQQQQQH HHQQVDGGFG FAAAAEPPTT AAAAASGSRW  480
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-3692156367Zinc finger protein JACKDAW
5b3h_F9e-3692156367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14758KQRSKTEVIRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843568.10.0protein indeterminate-domain 12
TrEMBLA0A0K9RK180.0A0A0K9RK18_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010679126.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-101indeterminate(ID)-domain 7