PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_057660_kapx.t1

Common Name

SOVF_057660

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 413aa MW: 47043.8 Da PI: 9.4453

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_057660_kapx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	164	187	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H r H Sp_057660_kapx.t1 164 YVCSVCGRKCKTNLDLKKHFRQlH 187 9******************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	3.3E-6	84	154	IPR029060	PIN domain-like
SuperFamily	SSF57667	4.05E-5	157	192	No hit	No description
PROSITE profile	PS50157	11.323	164	192	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0031	164	187	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	166	187	IPR007087	Zinc finger, C2H2
CDD	cd06167	4.03E-12	193	318	No hit	No description
Gene3D	G3DSA:3.40.50.1010	3.3E-6	249	303	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MILSLQISSA ILSPTHPSLS SSTIFFSPPF FNKPPFSISF PPKPSPIQII SLPLHCHNHR 60 ENHHHSLSSD IDMVQTRDGV FAPKQTKVVV LWDLDNKPPR GLPYDAAVSL KALASRFGEV 120 VDISAYANRH AFSHLPARVL EERRERRQLD VLERKGIITP SQPYVCSVCG RKCKTNLDLK 180 KHFRQLHERE RQKKLSRMKQ LKGKKRQKFK ERYLEKNYKF EEAARSLITP KVGYGLAKEL 240 RRAGVFVKTV EDKPQAADWA LKRQMLHSIS RGVDWLFLVS DDSDFREMLR RARESNLGTV 300 VVGDRNGALG MNADLWVPWM GVENGEVSEK DLVPKRKEVA DWGDDDSLMR GDGLFSISEF 360 DERVDGTESG TDLDRIVDEL GLPSRKPSVG SGRLNYPYET CLGLTFDNQD WCF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MILSLQISSA ILSPTHPSLS SSTIFFSPPF FNKPPFSISF PPKPSPIQII SLPLHCHNHR  60
ENHHHSLSSD IDMVQTRDGV FAPKQTKVVV LWDLDNKPPR GLPYDAAVSL KALASRFGEV  120
VDISAYANRH AFSHLPARVL EERRERRQLD VLERKGIITP SQPYVCSVCG RKCKTNLDLK  180
KHFRQLHERE RQKKLSRMKQ LKGKKRQKFK ERYLEKNYKF EEAARSLITP KVGYGLAKEL  240
RRAGVFVKTV EDKPQAADWA LKRQMLHSIS RGVDWLFLVS DDSDFREMLR RARESNLGTV  300
VVGDRNGALG MNADLWVPWM GVENGEVSEK DLVPKRKEVA DWGDDDSLMR GDGLFSISEF  360
DERVDGTESG TDLDRIVDEL GLPSRKPSVG SGRLNYPYET CLGLTFDNQD WCF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021839462.1	0.0	nucleolar transcription factor 1-A
TrEMBL	A0A0K9RK00	0.0	A0A0K9RK00_SPIOL; Uncharacterized protein
STRING	XP_010686395.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-126	C2H2-like zinc finger protein