PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_057630_sazk.t1

Common Name

SOVF_057630

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 435aa MW: 47967.5 Da PI: 7.2968

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_057630_sazk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	388	409	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Crff + C++G rC+F H+ Sp_057630_sazk.t1 388 VCRFFNSSQGCRRGLRCPFQHD 409 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.216	383	411	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-4	387	409	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	387	409	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MFVPEDCSSK IGNKAEDHLH TNPSLKYGSK PFSGTVKHTC IPQIKWKCPS MFILNSDWKV 60 VAGEFSKETE TQNYREKRVL EAGSTRPSAI APSPSISPGL EECDYDDLVT PVIPVIPVEE 120 EEEVIVNEKP VVGVSTALEA DIVAAAASAA FTAIMKSNEK GSLVDTDLLV KILSDPKMIE 180 ILSKKYSGFS ETTKTTPIYE LQDMNKKLLQ AVISIPMDPT TKTAIPSPET LELPGTVPLT 240 STAHILGSND TASASDFFFT QPDLLQNLTD VGPSLRTTTS RASMSNQDPP TELSRRPGYL 300 LEDYGPNMMS STEKHNQSMP LETQRSRSFS QHSSSSVKAP VEKDVNYYKT LIKLHGSKEE 360 HTEIHRPRAS APTAIFGQGD ARAKMKKVCR FFNSSQGCRR GLRCPFQHDS SIKVEAESVR 420 DAHTSKRIKF CRKLP

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MFVPEDCSSK IGNKAEDHLH TNPSLKYGSK PFSGTVKHTC IPQIKWKCPS MFILNSDWKV  60
VAGEFSKETE TQNYREKRVL EAGSTRPSAI APSPSISPGL EECDYDDLVT PVIPVIPVEE  120
EEEVIVNEKP VVGVSTALEA DIVAAAASAA FTAIMKSNEK GSLVDTDLLV KILSDPKMIE  180
ILSKKYSGFS ETTKTTPIYE LQDMNKKLLQ AVISIPMDPT TKTAIPSPET LELPGTVPLT  240
STAHILGSND TASASDFFFT QPDLLQNLTD VGPSLRTTTS RASMSNQDPP TELSRRPGYL  300
LEDYGPNMMS STEKHNQSMP LETQRSRSFS QHSSSSVKAP VEKDVNYYKT LIKLHGSKEE  360
HTEIHRPRAS APTAIFGQGD ARAKMKKVCR FFNSSQGCRR GLRCPFQHDS SIKVEAESVR  420
DAHTSKRIKF CRKLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021850130.1	0.0	zinc finger CCCH domain-containing protein 6-like
TrEMBL	A0A0K9RK11	0.0	A0A0K9RK11_SPIOL; Uncharacterized protein
STRING	XP_010679860.1	1e-110	(Beta vulgaris)