PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_056250_iudq.t1

Common Name

SOVF_056250

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 429aa MW: 46703 Da PI: 8.6706

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_056250_iudq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	90	150	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++al+cprCdstntkfCyynnysl+qPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Sp_056250_iudq.t1 90 NQEALRCPRCDSTNTKFCYYNNYSLTQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 150 68899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	92	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-33	92	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MLGNCEKMVL ISSPSNEWPL QIDDPKGTFN YNNNNNNNMA SVATAAAATI RTGVGERVMD 60 QKTAAIALQD QQQQKQQQQQ QQQQQQQQQN QEALRCPRCD STNTKFCYYN NYSLTQPRHF 120 CKACKRYWTR GGTLRNVPVG GGCRKNKRVK RPSNNNNSNI STTTSLSNPN ITSSNTLEGS 180 VNSSSGGGGG GGGGGAAGSG AQIHDLMSSG SNHHPHMSYY GLPTNSDINF PFSRYDLQNP 240 HHHHQINGLG LGFSSGLVHN MNSMNIHNNN NNNSNSNNNK QIFQDLISSN PLLSPNTSTT 300 TTTTATATTT SPTISSLLAS MKGGSINNHF QTLLPSYEDD LHMKGNGQNG PNVKMEFDGQ 360 NRSMDHHHHH LHQQWNNQAH QNGINHHQPL SMVSPSDPSI LWGNAGANLG AWLNPSENNN 420 LGSSVPSLI

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MLGNCEKMVL ISSPSNEWPL QIDDPKGTFN YNNNNNNNMA SVATAAAATI RTGVGERVMD  60
QKTAAIALQD QQQQKQQQQQ QQQQQQQQQN QEALRCPRCD STNTKFCYYN NYSLTQPRHF  120
CKACKRYWTR GGTLRNVPVG GGCRKNKRVK RPSNNNNSNI STTTSLSNPN ITSSNTLEGS  180
VNSSSGGGGG GGGGGAAGSG AQIHDLMSSG SNHHPHMSYY GLPTNSDINF PFSRYDLQNP  240
HHHHQINGLG LGFSSGLVHN MNSMNIHNNN NNNSNSNNNK QIFQDLISSN PLLSPNTSTT  300
TTTTATATTT SPTISSLLAS MKGGSINNHF QTLLPSYEDD LHMKGNGQNG PNVKMEFDGQ  360
NRSMDHHHHH LHQQWNNQAH QNGINHHQPL SMVSPSDPSI LWGNAGANLG AWLNPSENNN  420
LGSSVPSLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836884.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A0K9RKK6	0.0	A0A0K9RKK6_SPIOL; Uncharacterized protein
STRING	XP_010686431.1	1e-134	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-34	TARGET OF MONOPTEROS 6