PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_055290_kwui.t1
Common NameSOVF_055290
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 519aa    MW: 56558.1 Da    PI: 7.5886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_055290_kwui.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.82e-08344391455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +      K   Ka +L + ++Y++sLq
  Sp_055290_kwui.t1 344 SHSLAERVRREKIGERMKLLQDLVPGC-----DKlTGKALMLDEIINYVQSLQ 391
                        8*************************9.....46499***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16338409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-10338395No hitNo description
PROSITE profilePS5088815.358340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16340409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5344391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-10346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MPTWQSLSSA MEMQSSDCFL STQAPTKTDN FESAMSSMVS SPAASNSALS NDNFMIRELI  60
GKLGNICNSG DISTGGHHGP PPYIGGGNGG GNCSTNNSCY STPLSSPPKM GMSMPIMDHL  120
VKENFPTLGN SIALRSNFPA MPSDPGFAER AARFSSFGSR SFNGRTSQFV VNNNKIHNHN  180
NNHGNDNNAE FGYRSNNSNL VGNGKLQRVS SSPSLKEVGS QVEKNKNSLL LQNNERNQAG  240
NCGPEHGDFS NSRENSSISG QNPVGENGST RKRKAPAPKG KTKETLPHSP LHTNKVTENG  300
EDSSAKRTKS EEGGVSKTED NQKPPEAPKD YIHVRARRGQ ATDSHSLAER VRREKIGERM  360
KLLQDLVPGC DKLTGKALML DEIINYVQSL QRQVEFLSMK LSTVNPRLEF NMENLFSKDV  420
IQPNCSLTHP MYPLDSMAPT LYHQNSLQDS ITTTAPCHMD PLHLPSLDGF PNCLPQLSSL  480
CEGDLQSIVQ MGFGQKENGF QLQQPLHGSN PSSLMKIEF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863521.10.0transcription factor bHLH62-like
TrEMBLA0A0K9RKW50.0A0A0K9RKW5_SPIOL; Uncharacterized protein
STRINGXP_010685111.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-69bHLH family protein