PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_055290_kwui.t1 | ||||||||
Common Name | SOVF_055290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 519aa MW: 56558.1 Da PI: 7.5886 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 2e-08 | 344 | 391 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + K Ka +L + ++Y++sLq Sp_055290_kwui.t1 344 SHSLAERVRREKIGERMKLLQDLVPGC-----DKlTGKALMLDEIINYVQSLQ 391 8*************************9.....46499***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-16 | 338 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.75E-10 | 338 | 395 | No hit | No description |
PROSITE profile | PS50888 | 15.358 | 340 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-16 | 340 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 344 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-10 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MPTWQSLSSA MEMQSSDCFL STQAPTKTDN FESAMSSMVS SPAASNSALS NDNFMIRELI 60 GKLGNICNSG DISTGGHHGP PPYIGGGNGG GNCSTNNSCY STPLSSPPKM GMSMPIMDHL 120 VKENFPTLGN SIALRSNFPA MPSDPGFAER AARFSSFGSR SFNGRTSQFV VNNNKIHNHN 180 NNHGNDNNAE FGYRSNNSNL VGNGKLQRVS SSPSLKEVGS QVEKNKNSLL LQNNERNQAG 240 NCGPEHGDFS NSRENSSISG QNPVGENGST RKRKAPAPKG KTKETLPHSP LHTNKVTENG 300 EDSSAKRTKS EEGGVSKTED NQKPPEAPKD YIHVRARRGQ ATDSHSLAER VRREKIGERM 360 KLLQDLVPGC DKLTGKALML DEIINYVQSL QRQVEFLSMK LSTVNPRLEF NMENLFSKDV 420 IQPNCSLTHP MYPLDSMAPT LYHQNSLQDS ITTTAPCHMD PLHLPSLDGF PNCLPQLSSL 480 CEGDLQSIVQ MGFGQKENGF QLQQPLHGSN PSSLMKIEF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021863521.1 | 0.0 | transcription factor bHLH62-like | ||||
TrEMBL | A0A0K9RKW5 | 0.0 | A0A0K9RKW5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685111.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-69 | bHLH family protein |