PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_054400_ncjx.t1
Common NameSOVF_054400
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 500aa    MW: 55966.8 Da    PI: 6.7739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_054400_ncjx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.4e-49521772128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eelv +yL++kvegkk+++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + 
  Sp_054400_ncjx.t1  52 MPGFRFHPTEEELVEFYLRRKVEGKKFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIR 142
                        79***************************.89***************8778899************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Sp_054400_ncjx.t1 143 GENSRPIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 177
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.55251198IPR003441NAC domain
SuperFamilySSF1019411.18E-5551198IPR003441NAC domain
PfamPF023651.2E-2453177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAIANTMNLS NVDINNSGNN NDKQEDDQQP QQQQQQQQSD HDDDEHEHDM VMPGFRFHPT  60
EEELVEFYLR RKVEGKKFNV ELITFLDLYR YDPWELPALA AIGEKEWFFY VPRDRKYRNG  120
DRPNRVTTSG YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGIRTSW IMNEYRLPQH  180
ETERYQKAEI SLCRVYKRPG VEDHPSVPRG NSLPSRSSKA TSSSSERKNY HNAFRAQTTC  240
LQQQMEQQQP PPQMGEKVSE TDASSSTEVG TALGLSHHSS YSAVSPLATP LQQSLTPPPP  300
QPPTPSSIEV NRMMQLLNDN HPNLKHHQVV SGGGGGGGGD HGVITSMSSP LNASITHPSS  360
ALLHQPSMED IHRLVEYQQA CIHHHFQQQQ QPLPQQHHQQ FQFEALNNSG NPSSSGSTTN  420
NLPFLFSNYL FSPAQQAQAS LIDNPHPPTT TAAGGSSSSL QLPPVTVAGA GAGLAFSDRS  480
LWDWNPYSEP NRDHFSNLFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-545319819165NO APICAL MERISTEM PROTEIN
1ut4_B8e-545319819165NO APICAL MERISTEM PROTEIN
1ut7_A8e-545319819165NO APICAL MERISTEM PROTEIN
1ut7_B8e-545319819165NO APICAL MERISTEM PROTEIN
4dul_A8e-545319819165NAC domain-containing protein 19
4dul_B8e-545319819165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866240.10.0NAC domain-containing protein 35
TrEMBLA0A0K9RMX90.0A0A0K9RMX9_SPIOL; Uncharacterized protein
STRINGXP_010682089.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-112NAC domain containing protein 35