PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_052830_dptr.t1
Common NameSOVF_052830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 397aa    MW: 43483.4 Da    PI: 7.1249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_052830_dptr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.9e-34207264259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v++tYeg+H+h+
  Sp_052830_dptr.t1 207 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFNDPSIVVTTYEGQHTHP 264
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-34191264IPR003657WRKY domain
SuperFamilySSF1182907.98E-29198264IPR003657WRKY domain
PROSITE profilePS5081130.515201266IPR003657WRKY domain
SMARTSM007745.1E-40206265IPR003657WRKY domain
PfamPF031061.9E-26207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEMKNPVKME TLINSNSNHP SSKPKSISST TKSLANSNCF DSQVFDQKIS CSSSSTTTTS  60
SSATTGFMEL LGMQDMIHHI NPSLFDMIMM NSYGGSTFTE DFPTTMDPLA PDPTPPPPTS  120
SSIIVNPELS EILNTTTNSN NINIPTTPNS SSISSASNDE HQQEVDEDDD EEQKAKKIST  180
KAKKTNQKRQ REPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTSVSCNVK  240
KRVERSFNDP SIVVTTYEGQ HTHPCTILPR GVMPGPGYGS GFGFGVGATS SFGNLPMQMV  300
NNNHHQLQMN YVSSLIPHQL NHFGNNNNNN NNNITLPNPN PTTTTTTNVS NSCSVLASQE  360
RRFCGGAAAA AAPVGGALLR DHGLLQDIVP SIMKKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-251992631074Probable WRKY transcription factor 4
2lex_A5e-251992631074Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836973.10.0probable WRKY transcription factor 23
TrEMBLA0A0K9RLH10.0A0A0K9RLH1_SPIOL; Uncharacterized protein
STRINGXP_010679416.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-45WRKY DNA-binding protein 23