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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_052800_gxnr.t2 | ||||||||
Common Name | SOVF_052800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 23643.2 Da PI: 8.8917 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.5e-10 | 37 | 89 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 + hn+ E+ RR ++N+ f +Lr+llP + ++kK s + +A +Y+ +Lq Sp_052800_gxnr.t2 37 KLDHNAKEKVRRMKLNEIFLTLRTLLPDsR---RAKKrWSAPYVIDRALDYVPQLQ 89 678*************************66...77777****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.33E-8 | 33 | 93 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-13 | 34 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.15 | 35 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-11 | 37 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-7 | 37 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-5 | 41 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MQYYCPTTTN TTTITTAATT AGVAAVSGVG EGSSSKKLDH NAKEKVRRMK LNEIFLTLRT 60 LLPDSRRAKK RWSAPYVIDR ALDYVPQLQA EVEKLTLEKN NMISVLGKKQ KLQVVVDNNN 120 VANKDNKTLT VSMNEVKNGE VIVQICEQNN NNVGMLSTLI EKLEGQGMIV LGASSQHVCE 180 DRSCFHLHVQ MGENPVEADY VAVLHKKIIS WLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021836919.1 | 1e-158 | transcription factor bHLH160 | ||||
Refseq | XP_021836924.1 | 1e-158 | transcription factor bHLH160 | ||||
Refseq | XP_021836930.1 | 1e-158 | transcription factor bHLH160 | ||||
TrEMBL | A0A0K9RLF1 | 1e-156 | A0A0K9RLF1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679419.1 | 1e-102 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 5e-28 | bHLH family protein |