PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_052530_udii.t1
Common NameSOVF_052530
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 341aa    MW: 38676.8 Da    PI: 6.6423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_052530_udii.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-151462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd  l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  Sp_052530_udii.t1 14 KGPWSPEEDATLKSYIEQKGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding38.13.5e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T+eE+ ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Sp_052530_udii.t1  69 GGFTEEEENIICSLYLNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.814962IPR017930Myb domain
SuperFamilySSF466892.05E-2511109IPR009057Homeodomain-like
SMARTSM007173.2E-111364IPR001005SANT/Myb domain
PfamPF002492.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-241569IPR009057Homeodomain-like
CDDcd001678.12E-81662No hitNo description
PROSITE profilePS5129421.00263117IPR017930Myb domain
SMARTSM007172.9E-1067115IPR001005SANT/Myb domain
PfamPF002497.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2470117IPR009057Homeodomain-like
CDDcd001673.86E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKSYIE QKGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEENIIC SLYLNIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLMAK  120
QRKDQAACRL LEQEIKRESE TFMVNQTLNH NQIQVPYWAE QHTSMPMTTM HPSLVHHHHH  180
PHLGNQDQFT RLLTKIEGHL YDDPQLSNYQ YPTQQQQQQE HLYVQASSSE VAINTTTMTT  240
NVNYTQWLNT EYDGSMNLPS SDEFEVYLSN NNDNQLGRFD GNESCSGGGG VDIGNNSSTT  300
SNSAGSSSWE DMSSLVNTNT PASSFDTYQN RSMADPGFWN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864855.10.0transcription factor RAX3-like
SwissprotQ9M2Y91e-85RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0K9RLN90.0A0A0K9RLN9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010679693.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-85myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]