PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_052010_xfcd.t1
Common NameSOVF_052010
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 373aa    MW: 41624.7 Da    PI: 6.9552
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_052010_xfcd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-191562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lvd++ ++G g+W++ ++  g++R++k+c++rw +yl
  Sp_052010_xfcd.t1 15 KGPWTPEEDKKLVDYIDRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                       79********************************************97 PP
2Myb_DNA-binding53.74.6e-1768113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++++E++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Sp_052010_xfcd.t1  68 RGKFSEDEEQTIINLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 113
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-25665IPR009057Homeodomain-like
PROSITE profilePS5129417.6791062IPR017930Myb domain
SuperFamilySSF466891.91E-3112109IPR009057Homeodomain-like
SMARTSM007171.1E-141464IPR001005SANT/Myb domain
PfamPF002491.9E-171562IPR001005SANT/Myb domain
CDDcd001679.73E-121762No hitNo description
PROSITE profilePS5129426.54663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2766117IPR009057Homeodomain-like
SMARTSM007171.6E-1667115IPR001005SANT/Myb domain
PfamPF002494.8E-1668113IPR001005SANT/Myb domain
CDDcd001672.32E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMGRSPCCDE SGLKKGPWTP EEDKKLVDYI DRHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDEEQTII NLHSVLGNKW SAIASHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDLNLLANLP QLLMAANLSN SLMMNNSTGN GIPTLEDTLR LLESDATQLA  180
KFHIFNNMLQ VLSPSPSSSS NPPGVASQIT NLLCNSTMPF QNQLNDNIIR MANSQVDNGF  240
TGQFPPSNHL VSSSYEEAPA THQFQPNSKH NHRQRSNTSN DHHHNDKQTN GEILTPDSMM  300
PGLVPASPDH CSALQTEFMS NSNKLMNQKD DAMMSSNPSS ATTTATPFGM AAADWTNDLI  360
DDAAHFYWRD IIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846262.10.0transcription factor MYB41
SwissprotQ9S9Z23e-90MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0K9RLU60.0A0A0K9RLU6_SPIOL; Uncharacterized protein
STRINGXP_010671094.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-87myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]