PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_050830_qpkp.t1
Common NameSOVF_050830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 392aa    MW: 43986.4 Da    PI: 5.6883
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_050830_qpkp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.5e-061455338
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       +r C+ + +  + ++C+ ++  lC +C  e H+       Ht
  Sp_050830_qpkp.t1 14 KRLCDFCTDSVALIYCRADSAKLCLSCDREVHSTnqlftkHT 55
                       578******99*********************6677777777 PP
2zf-B_box24.74.9e-0858103442
           zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                        + C+ +++ ++++fC++ ++ lC++C  e H++       H+++pl
  Sp_050830_qpkp.t1  58 QLCDACDSSPASIFCHTENSVLCQNCDYECHSRlsgsslnHDRRPL 103
                        68*****************************889999999998875 PP
3CCT61.13.7e-21343385143
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        R+ al+RYkeK++tR+FeK+irYesRK  A++R R+KGrF+k 
  Sp_050830_qpkp.t1 343 RDSALSRYKEKKRTRRFEKHIRYESRKLQADNRIRIKGRFAKV 385
                        899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2671259IPR000315B-box-type zinc finger
SMARTSM003361.2E-121259IPR000315B-box-type zinc finger
PfamPF006433.5E-51456IPR000315B-box-type zinc finger
CDDcd000211.28E-51559No hitNo description
PROSITE profilePS5011910.8555103IPR000315B-box-type zinc finger
PfamPF006435.8E-658103IPR000315B-box-type zinc finger
CDDcd000211.84E-559103No hitNo description
SMARTSM003360.2860103IPR000315B-box-type zinc finger
PROSITE profilePS5101714.703343385IPR010402CCT domain
PfamPF062033.7E-15343384IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MPNSPQNDQT NTHKRLCDFC TDSVALIYCR ADSAKLCLSC DREVHSTNQL FTKHTRFQLC  60
DACDSSPASI FCHTENSVLC QNCDYECHSR LSGSSLNHDR RPLEGFTGCP SVADLSVSIG  120
FEGFDSKCLS IGGESDAVSN KGLFSGLDEE GNDDGFSDLF VWDVPTMVSL DDLIVSTDRL  180
DHGFQAMVVP PLPKDRNLSC GQRKHEILYQ LRELAKSEPG IQQDVKPRVN HHTVADEDEK  240
DSSIQHKFQT YQHDEEHPTF NGNEESPYTW YNGTGEDVND ICLSSALSGS HIEDSALNSN  300
TPSDMCNSTN LTTNGWNSQH PNGNESTGFT QNVATRELTS AERDSALSRY KEKKRTRRFE  360
KHIRYESRKL QADNRIRIKG RFAKVVNRKN QA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851770.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A0K9RM820.0A0A0K9RM82_SPIOL; Uncharacterized protein
STRINGXP_010696415.11e-178(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-85B-box type zinc finger protein with CCT domain