PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_049430_twpd.t1
Common NameSOVF_049430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 536aa    MW: 59695.6 Da    PI: 7.3926
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_049430_twpd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-1467107246
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 
                        +ykGVr++k +g+++AeIrdp     +  r++lg+f+ta+eA++ +
  Sp_049430_twpd.t1  67 KYKGVRRRK-WGKYAAEIRDPI----NkVRIWLGTFDTAKEAYEVY 107
                        8*****998.**********72....35**********99999877 PP
2AP230.31e-09161199547
                AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                        GV + k +g+W A+I +p++   ++r++lg+f++aeeA + + 
  Sp_049430_twpd.t1 161 GVKRVK-SGKWTARITHPKT---KARIWLGTFDSAEEAGRVYK 199
                        898777.8*********954...5**************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.75467126IPR001471AP2/ERF domain
CDDcd000181.00E-1767107No hitNo description
PfamPF008476.5E-867107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-1867108IPR001471AP2/ERF domain
SMARTSM003809.6E-1667127IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1467114IPR016177DNA-binding domain
PRINTSPR003672.7E-86879IPR001471AP2/ERF domain
PROSITE profilePS5103213.656158215IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-10161206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-12161202IPR001471AP2/ERF domain
SMARTSM003804.2E-5161212IPR001471AP2/ERF domain
CDDcd000181.43E-13161198No hitNo description
PRINTSPR003672.7E-8181197IPR001471AP2/ERF domain
PROSITE profilePS510328.584208282IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-5229277IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MKRFRVFCTD PDATDSSSSD EENTIGEKPA KKKRFLREIN VGSGGEAPEI PKMRVSPAEE  60
TPGKAVKYKG VRRRKWGKYA AEIRDPINKV RIWLGTFDTA KEAYEVYYMK KLEFDALRNL  120
GKSNSIELKS AGLTNSGVKD CEGEVAGKGD DGVEFPVIPD GVKRVKSGKW TARITHPKTK  180
ARIWLGTFDS AEEAGRVYKM KEVEFEERFK GKEVPRVKDL GGKNVCPAVR MLGDGRWEAR  240
VWHPKMRSYV MLGSYDSREL AEIAVKMKKS QFHKRFGCMK RVTSKHKSGD GSWRLGCGDE  300
IPNDGVGYVT REIVIALAAP MLPSEGEAMK EQSTNSDFVK ATDGKKAKGL ELPAGVKMTK  360
SGRFGVRVTH PVSGAEHWLR SYATLEEAVN AVERKTAEFE KELKSKKTEC GVLNGSLTSV  420
FVGAEDDESS RIESVMSLNE GVNIPVKLEP GVVHGSPTSV FDVESVNCSS VDESKASEIR  480
SEPSFFDEAV RMGIMNQYGQ LLGEYSKCDE PMWLSNDDED EDEDESATCY YSRCYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843489.10.0uncharacterized protein LOC110783458
TrEMBLA0A0K9RMK60.0A0A0K9RMK6_SPIOL; Uncharacterized protein
STRINGXP_010681552.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-20ERF family protein