PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_049120_hoyq.t2
Common NameSOVF_049120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 463aa    MW: 51555 Da    PI: 8.3108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_049120_hoyq.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11.1e-15269315455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Sp_049120_hoyq.t2 269 VHNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 315
                        5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-16262319No hitNo description
SuperFamilySSF474591.02E-18263324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.288265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-18269322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13269315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-17271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLLIQSNLNH HLCRRCHFNS RFQEPSLHKL SPPPSPPVLI RLHMYFTVIV ILFWVDYEMA  60
ELTWENGHLM MHGLGLPRVS SKSSLAEAVA WVDNCDKPST RANGMLESIV NQGYHIPKPT  120
LPPGRKAGAS EHDDDYSVPW CGPTPPPHVP VTLDALVPNT NVMGCSTRVG SCSTAARVPL  180
GSDWSVSKGA PESTRRKRHA EDTCQQLRNM NNNNVHTSTS LGPASPENTK TCTVDDHDSV  240
CHSRSQRERG EEEENQKQGA AKRSRVAAVH NQSERKRRDK INQRMKTLQK LVPNSNKTDK  300
ASMLDEVIEY LKQLQAQIQM LNRMSYPSMM MPLAIQQQLQ MSMMGMGMMG MGMDQMNMNM  360
NMNMMNPMAT RANVAGVPPP SFMNLGGAYN NMPIATTCDG NIAGGGECIL PQGSMVPSDP  420
LSAYLACQSH PSMTMDAYSK MAAMYQQLQQ QTQQLQQHHK QQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278ERKRRD
2274279RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849336.10.0transcription factor UNE10-like isoform X2
TrEMBLA0A0K9RMR00.0A0A0K9RMR0_SPIOL; Uncharacterized protein
STRINGXP_010692152.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-60bHLH family protein