PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_049120_hoyq.t1
Common NameSOVF_049120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 453aa    MW: 50272.4 Da    PI: 8.3127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_049120_hoyq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15259305455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Sp_049120_hoyq.t1 259 VHNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 305
                        5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-16252309No hitNo description
SuperFamilySSF474591.03E-18253314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.288255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-18259312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13259305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-17261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLLIQSNLNH HLCRRCHFNS RFQEPSLHKL SPPPSPPVLI RLHMVDYEMA ELTWENGHLM  60
MHGLGLPRVS SKSSLAEAVA WVDNCDKPST RANGMLESIV NQGYHIPKPT LPPGRKAGAS  120
EHDDDYSVPW CGPTPPPHVP VTLDALVPNT NVMGCSTRVG SCSTAARVPL GSDWSVSKGA  180
PESTRRKRHA EDTCQQLRNM NNNNVHTSTS LGPASPENTK TCTVDDHDSV CHSRSQRERG  240
EEEENQKQGA AKRSRVAAVH NQSERKRRDK INQRMKTLQK LVPNSNKTDK ASMLDEVIEY  300
LKQLQAQIQM LNRMSYPSMM MPLAIQQQLQ MSMMGMGMMG MGMDQMNMNM NMNMMNPMAT  360
RANVAGVPPP SFMNLGGAYN NMPIATTCDG NIAGGGECIL PQGSMVPSDP LSAYLACQSH  420
PSMTMDAYSK MAAMYQQLQQ QTQQLQQHHK QQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268ERKRRD
2264269RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849337.10.0transcription factor UNE10-like isoform X3
TrEMBLA0A0K9RMR60.0A0A0K9RMR6_SPIOL; Uncharacterized protein
STRINGXP_010692152.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-61bHLH family protein