PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_047100_zuho.t2

Common Name

SOVF_047100

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 1813aa MW: 204195 Da PI: 7.2465

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_047100_zuho.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.4e-14	339	428	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv+ +++++ l +p kf e ++ + + led++g++W v l + g+ ++kGW eF k++gL+ gDf++F+++ +s+f Sp_047100_zuho.t2 339 FFKVM-FGKNFSQH-LFVPPKFSELLRSS--VGEKAYLEDSTGQKWAVAL--SDVLGSLAFQKGWDEFTKDHGLELGDFLLFRYTTESCF-- 422 66666.33455555.889**9666544..3448***********..99999*************************999999.. PP EEEEE- CS B3 93 vvkvfr 98 +v ++ Sp_047100_zuho.t2 423 FVEIYG 428 888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11152	3.7E-51	84	298	IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4
Gene3D	G3DSA:2.40.330.10	9.6E-20	333	430	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-20	334	437	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.08E-14	337	427	No hit	No description
PROSITE profile	PS50863	13.338	337	430	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-8	339	430	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.9E-13	339	428	IPR003340	B3 DNA binding domain
TIGRFAMs	TIGR01640	4.8E-16	1556	1778	IPR017451	F-box associated interaction domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010190	Biological Process	cytochrome b6f complex assembly
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1813 aa Download sequence Send to blast
MGILTGNQLV PLSLAFPIRA NPNYHLHDIV RLVTPLKTRR NSRKSLKLSA KLDDSSSPTN 60 SQQQLNLSVL RFTFGISWLD ESYLPRWIGY GFGSLVILNH FVGSSSPVTS AQLISEALGL 120 SLAAFSVTLP YMGRFLKGAA PEELASLPQR AEQVFVMSHN VSDTLKEDLA WTTYILLRNT 180 KSVSVLISLQ DVICVRGYWN LPENLSKDEI LNWFMGKIRK NGLSDVKETL YFPQSTGSVL 240 KEAIPEETGS ILVQPLCSSE AQGKGNENDV GFVLVASGVS YAYDEKDKLW IKAIANKFKV 300 RCLQLCQMDC KVDPSGECSR NGLLIHREKH GLSPRIPPFF KVMFGKNFSQ HLFVPPKFSE 360 LLRSSVGEKA YLEDSTGQKW AVALSDVLGS LAFQKGWDEF TKDHGLELGD FLLFRYTTES 420 CFFVEIYGRD GYEKTYPGVQ SFKNKIPKTT SNSITRKSPS DPLYEKRKPS QENDRSNVCA 480 VSRSKVDISD NIRIHDDVND VQNSLVVEEN VQSQEFSIER PQLVPKVDFL VEPCFLIDRE 540 TSFSREDDRE RLFDLSALEL PGIKPSFTSK KAGAFHEAHT GDASIDTKNS PLIGALHEAH 600 TGDASIDTNK SPLIQGAFHK AHTGDATIDT KKSLLIQENV VPSKNYEDKS EVQINEDEPK 660 SGDPILEQPS KASSSSKEVE DDEGNQIPYR DNDNMMPSSS NNVELTFMMG PHIKPSTTTE 720 VTRTNDIPSF LEENDNVIPE SMNNDEETLI PHGKPSSIIP PSKKWGRLKS TISKIVAKKK 780 TGGKWVPGGP SKPSLAEGDS RAKKKAYPVL VKELVDELCS IRRDWIADAG FWSISDPKVE 840 FRVEPCFPTN RETSFAGKDD RERLFNLSAL ELPDMKPSFT SKKAGAFHGT HTGDASINKK 900 QSPLIISAFH EAHTGDSSID TNKSALLQSA SHNAHTGDAS IDKNKSPISL GAFHEAHTGD 960 ASIGTMKTPL IQENVVPSKN NEEKLPSSVS KPFLSVSPSL NLCSRSVPPS KTIRESHTCE 1020 PSAASGFSQP PGNSEENSEV EMQINEDEPK SRDPILEQSS KVSSSSKEVE DNEGSFHGDN 1080 DNVRLSSSNI AEQTFVMRPH IKPSTTKEVT NTHDISSFPE ENDNVIPVSM KNDEETLIPH 1140 GKPSTTAQDL ATPLNGGPVI HNNPPSKKRG RPKKIISEIE AKNKTPGKWV PGGPGRPPLG 1200 QGESKAKMQH SALRTYPGLV KELVDELCPI RRDWVVGAGF GSILDLKITK VNRYFMTWLE 1260 GRWDWKRQVL RIREDYEIVI DEKMISWITG VPIGSYNFPK RRTENKELTQ LEKEYYGKKG 1320 IDYVRVYNKC LLELDDKDVF LRHFVLLTFG SLFCMNKCNF ITPKLLSILK KEYITDPSEW 1380 NWCGFLYDWI AGHGKEQGKA SALILLIAYL DRIKYTATSR SWKTDSPRIG AWQTEDLIEV 1440 IAQDMGPDGS FGHSEVVRDV VYGEPYPVGK PLTPPPWFNR RGQNKVGKPI PSSNEALKVD 1500 NRPRILRNLR QRHHKIKTRF RQPEFFSLRY DQTNYDVEDF VPLAYEIGDR RPRLVGSCNG 1560 LVCLIVYPHN FQEFLTISNP ATHRDRKIML PDGKQRAWRS WCQFYYDSST DEYKIFGVFS 1620 ASRRDSNIMV PDDDYFYVNF HVFSGNTGIW TRVDNLDKRF RVREIRKTVL VHDTIYLLVW 1680 KSPVDVFAFD LITDQLKPFP LMNCLRKYKG VEMLELRGCL SLICSPKRFD FDVWMLKQPS 1740 DENSWQKSFS FSSKIIKPYS ISKTGMCLVH TDGRFYVCDP SRETLQLSQR GIAFENNDFY 1800 VSVDYIESLV SPF

Sequence ? help Back to Top

Protein Sequence Length: 1813 aa Download sequence Send to blast

MGILTGNQLV PLSLAFPIRA NPNYHLHDIV RLVTPLKTRR NSRKSLKLSA KLDDSSSPTN  60
SQQQLNLSVL RFTFGISWLD ESYLPRWIGY GFGSLVILNH FVGSSSPVTS AQLISEALGL  120
SLAAFSVTLP YMGRFLKGAA PEELASLPQR AEQVFVMSHN VSDTLKEDLA WTTYILLRNT  180
KSVSVLISLQ DVICVRGYWN LPENLSKDEI LNWFMGKIRK NGLSDVKETL YFPQSTGSVL  240
KEAIPEETGS ILVQPLCSSE AQGKGNENDV GFVLVASGVS YAYDEKDKLW IKAIANKFKV  300
RCLQLCQMDC KVDPSGECSR NGLLIHREKH GLSPRIPPFF KVMFGKNFSQ HLFVPPKFSE  360
LLRSSVGEKA YLEDSTGQKW AVALSDVLGS LAFQKGWDEF TKDHGLELGD FLLFRYTTES  420
CFFVEIYGRD GYEKTYPGVQ SFKNKIPKTT SNSITRKSPS DPLYEKRKPS QENDRSNVCA  480
VSRSKVDISD NIRIHDDVND VQNSLVVEEN VQSQEFSIER PQLVPKVDFL VEPCFLIDRE  540
TSFSREDDRE RLFDLSALEL PGIKPSFTSK KAGAFHEAHT GDASIDTKNS PLIGALHEAH  600
TGDASIDTNK SPLIQGAFHK AHTGDATIDT KKSLLIQENV VPSKNYEDKS EVQINEDEPK  660
SGDPILEQPS KASSSSKEVE DDEGNQIPYR DNDNMMPSSS NNVELTFMMG PHIKPSTTTE  720
VTRTNDIPSF LEENDNVIPE SMNNDEETLI PHGKPSSIIP PSKKWGRLKS TISKIVAKKK  780
TGGKWVPGGP SKPSLAEGDS RAKKKAYPVL VKELVDELCS IRRDWIADAG FWSISDPKVE  840
FRVEPCFPTN RETSFAGKDD RERLFNLSAL ELPDMKPSFT SKKAGAFHGT HTGDASINKK  900
QSPLIISAFH EAHTGDSSID TNKSALLQSA SHNAHTGDAS IDKNKSPISL GAFHEAHTGD  960
ASIGTMKTPL IQENVVPSKN NEEKLPSSVS KPFLSVSPSL NLCSRSVPPS KTIRESHTCE  1020
PSAASGFSQP PGNSEENSEV EMQINEDEPK SRDPILEQSS KVSSSSKEVE DNEGSFHGDN  1080
DNVRLSSSNI AEQTFVMRPH IKPSTTKEVT NTHDISSFPE ENDNVIPVSM KNDEETLIPH  1140
GKPSTTAQDL ATPLNGGPVI HNNPPSKKRG RPKKIISEIE AKNKTPGKWV PGGPGRPPLG  1200
QGESKAKMQH SALRTYPGLV KELVDELCPI RRDWVVGAGF GSILDLKITK VNRYFMTWLE  1260
GRWDWKRQVL RIREDYEIVI DEKMISWITG VPIGSYNFPK RRTENKELTQ LEKEYYGKKG  1320
IDYVRVYNKC LLELDDKDVF LRHFVLLTFG SLFCMNKCNF ITPKLLSILK KEYITDPSEW  1380
NWCGFLYDWI AGHGKEQGKA SALILLIAYL DRIKYTATSR SWKTDSPRIG AWQTEDLIEV  1440
IAQDMGPDGS FGHSEVVRDV VYGEPYPVGK PLTPPPWFNR RGQNKVGKPI PSSNEALKVD  1500
NRPRILRNLR QRHHKIKTRF RQPEFFSLRY DQTNYDVEDF VPLAYEIGDR RPRLVGSCNG  1560
LVCLIVYPHN FQEFLTISNP ATHRDRKIML PDGKQRAWRS WCQFYYDSST DEYKIFGVFS  1620
ASRRDSNIMV PDDDYFYVNF HVFSGNTGIW TRVDNLDKRF RVREIRKTVL VHDTIYLLVW  1680
KSPVDVFAFD LITDQLKPFP LMNCLRKYKG VEMLELRGCL SLICSPKRFD FDVWMLKQPS  1740
DENSWQKSFS FSSKIIKPYS ISKTGMCLVH TDGRFYVCDP SRETLQLSQR GIAFENNDFY  1800
VSVDYIESLV SPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842318.1	0.0	uncharacterized protein LOC110782465 isoform X2
TrEMBL	A0A0K9RNC1	0.0	A0A0K9RNC1_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	8e-14	B3 family protein