PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046550_watp.t1
Common NameSOVF_046550
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 507aa    MW: 55801.2 Da    PI: 5.2537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046550_watp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd++lv  ++ +G  +W++ ++  g+ R++k+c++rw +yl
  Sp_046550_watp.t1 14 KGPWTSEEDQILVTFIHNHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP
2Myb_DNA-binding48.42.1e-1567112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Sp_046550_watp.t1  67 RGNFSREEEDSIIQLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129414.912961IPR017930Myb domain
SuperFamilySSF466897.11E-2911108IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-141461IPR001005SANT/Myb domain
CDDcd001673.09E-101661No hitNo description
PROSITE profilePS5129424.62962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565117IPR009057Homeodomain-like
SMARTSM007176.0E-1466114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001672.07E-1069112No hitNo description
PROSITE profilePS5087353.731240495IPR002016Haem peroxidase, plant/fungal/bacterial
Gene3DG3DSA:1.10.520.101.7E-22254348No hitNo description
PfamPF001411.2E-53254462IPR002016Haem peroxidase, plant/fungal/bacterial
SuperFamilySSF481138.25E-67260495IPR010255Haem peroxidase
CDDcd006939.76E-115262494No hitNo description
PRINTSPR004611.2E-22272285IPR000823Plant peroxidase
PRINTSPR004611.2E-22291301IPR000823Plant peroxidase
PRINTSPR004581.6E-16292309IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004611.2E-22310325IPR000823Plant peroxidase
PRINTSPR004581.6E-16310322IPR002016Haem peroxidase, plant/fungal/bacterial
Gene3DG3DSA:1.10.420.106.8E-37349477No hitNo description
PRINTSPR004611.2E-22356368IPR000823Plant peroxidase
PRINTSPR004581.6E-16357372IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004611.2E-22416431IPR000823Plant peroxidase
PRINTSPR004581.6E-16418433IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004611.2E-22432449IPR000823Plant peroxidase
PRINTSPR004611.2E-22472485IPR000823Plant peroxidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0055114Biological Processoxidation-reduction process
GO:0098869Biological Processcellular oxidant detoxification
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGRAPCCDKV GLKKGPWTSE EDQILVTFIH NHGHSNWRAL PKQAGLLRCG KSCRLRWINY  60
LKPDIKRGNF SREEEDSIIQ LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKEYE  120
PTKSSSRGKT SKKSRANNNN AAVPTTTTDS NTSGGNDSFP ESSSIATSGS PQQSSTTTTT  180
TTSDDYFSSG TEVSSSVELF PNSDTSLFGS PSLEYLPIID ETFWESSSSQ EVALDTSEFD  240
YIVEDNDQIV QFESFLREED QEKEAGANAS VREYELIDEI KNFLEQACRG IVSCADIITL  300
ATRDAIALAG GPVYNVPTGR LDGLISRASE VNLPGPASTV AQIRQTFRAR GMTVRDMVLL  360
VGGGHSIGVA HCNFFQDRLF NFQGTGAPDS TMDTTLLNEL QGLCGFSSQV PNPTTFLDQN  420
TSFVLDNEIY KQMKMNRGIL QIDQELALDP LSSKIVSDFA ADNGFFRRRF VDAIIKMGNL  480
PGSGGEVRGN CRRINSATAQ QSLLSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1pa2_A2e-5026249565304PEROXIDASE
1qo4_A2e-5026249565304PEROXIDASE
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847645.10.0transcription factor MYB30-like
TrEMBLA0A0K9RNI00.0A0A0K9RNI0_SPIOL; Peroxidase
STRINGXP_010695531.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-79myb domain protein 15