PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_046520_nxcc.t2 | ||||||||
Common Name | SOVF_046520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 1162aa MW: 131275 Da PI: 6.6675 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81 | 1.2e-25 | 52 | 111 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqKe+ gs++prsY+rCt++ gC + kkv+r + d+++ +i Y+g H+++ Sp_046520_nxcc.t2 52 LDDGYSWRKYGQKEILGSKYPRSYFRCTYKeeGCAAVKKVQRID-DGDAYQISYKGLHTCS 111 59***************************9999**********9.**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-23 | 43 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.842 | 47 | 108 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-22 | 50 | 111 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-34 | 52 | 112 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-23 | 53 | 110 | IPR003657 | WRKY domain |
SuperFamily | SSF52540 | 4.94E-39 | 266 | 502 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.2E-45 | 268 | 528 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 1.7E-9 | 273 | 372 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 3.3E-16 | 280 | 295 | No hit | No description |
PRINTS | PR00364 | 3.3E-16 | 353 | 367 | No hit | No description |
PRINTS | PR00364 | 3.3E-16 | 445 | 459 | No hit | No description |
SuperFamily | SSF52058 | 2.81E-28 | 642 | 805 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 8.1E-17 | 648 | 760 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 2.0E-10 | 666 | 723 | IPR001611 | Leucine-rich repeat |
PRINTS | PR00364 | 3.3E-16 | 710 | 726 | No hit | No description |
Gene3D | G3DSA:3.80.10.10 | 2.7E-5 | 790 | 860 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 2.7E-5 | 916 | 1026 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 2.81E-28 | 920 | 1030 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 2.7E-5 | 1073 | 1114 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1162 aa Download sequence Send to blast |
PQESMEKMSS KEKGVASNRK SYEHLWQQDR NSPIKRKRSN PQTTEVVVPE LLDDGYSWRK 60 YGQKEILGSK YPRSYFRCTY KEEGCAAVKK VQRIDDGDAY QISYKGLHTC SNGKKIMPFA 120 AGSTSGASDS QPFKISFGMD EYRPLEVPTA LTMTESFTIT GIPFFGSKGT NTPDSEREAL 180 KSSQIHNADV TNQTRQEESI IPLTTISNKS SKPVSTDSTF SENDKRKKEG EIKTSSTHCR 240 LRNLGGDPDF NSLPTVKYSA STDCNLQKLL SAFRDVEVKK IGICGTGGIG KTTLMKSFLS 300 RNFIKRLFDL VLWVTIPRCS SRRTIQNSLV QQLSLNVPKI KSDDEVAMIL LQTLLARKFV 360 LFLDNVSEYI DIPMVGIPVG NLDNDYMIIL TTRSVNICEA MEVDRIIEAE VLTREESLQL 420 FRFHVGHLMD SEDIEPYGRA IVNECSGLPL VIKVAGSALR MDDSIFAWKH TLKEILLTNS 480 LRVLKIGYDR LKDNDNRSSF LYTALFTESK AVKISSLIEY LVDEGIVAGS TSDARRRGHD 540 IIKHLIDVSL LQCSNDGLMV EMHGFLHDLA LVILSDAKGL QMLLSRYFRS ILSQKNLLSL 600 ISNPTFVQPE SSEREKVSPS DGHRSILKAG EDLSEPPLEE AWEEAKMVFL MDNTLSNLPK 660 RPACSKLLTL FLQRNSSLRV IPPSFFENMS SLQILNLSKT RIKSLPQSLS KLECLQVLIL 720 RNCERLLFLP PAIVALKNLL VLDVHGTEIC QLPDQICELV CLVHLEVCFY GSMDEDECAM 780 LPSQLISKGI FSKLIKLKEL SINVYPGDPR WSKIASDVTT EVSNLKLCSL SFHFPEAKHL 840 EYFINASPAW LHRTLTRFDF VVGHDVKRVV SRVSDDLEHE YHQQDRCLRF VDGDDMPDAV 900 RKVLSQATAF YVDHHLTAQS LTQFGRATIN DLKFCVVRDC PKLKAIVNTT KLTGNCFPFL 960 ELLSIHNSWN LSWIWMGPVR AGSLSMLKRI SIHSCPKLEF ILCRSMVAVL SNLEELIVED 1020 CQSLKNVIRN KDQSSADDDS DFSESNVADF NSISGDVVAK DQMEVDPPDS AELRIKVLKL 1080 HYLPKLVNIW DGGDFPCLEY FSVYNCPRLK NLGLKYQDEV TIKEIKAETC WWNGLEWGDP 1140 ALLPKLQVRF KEIQTDDIWD TT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 7e-18 | 47 | 110 | 3 | 68 | OsWRKY45 |
6j5t_C | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_F | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_G | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_L | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_O | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j5u_A | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j5v_A | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j5w_A | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_C | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_F | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_G | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_L | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_O | 1e-17 | 275 | 851 | 179 | 758 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021861126.1 | 0.0 | probable disease resistance protein At4g27220 | ||||
TrEMBL | A0A0K9RNI4 | 0.0 | A0A0K9RNI4_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010673258.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 3e-21 | WRKY DNA-binding protein 30 |