PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046520_nxcc.t2
Common NameSOVF_046520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 1162aa    MW: 131275 Da    PI: 6.6675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046520_nxcc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.2e-2552111159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqKe+ gs++prsY+rCt++  gC + kkv+r + d+++ +i Y+g H+++
  Sp_046520_nxcc.t2  52 LDDGYSWRKYGQKEILGSKYPRSYFRCTYKeeGCAAVKKVQRID-DGDAYQISYKGLHTCS 111
                        59***************************9999**********9.**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2343111IPR003657WRKY domain
PROSITE profilePS5081118.84247108IPR003657WRKY domain
SuperFamilySSF1182909.94E-2250111IPR003657WRKY domain
SMARTSM007748.7E-3452112IPR003657WRKY domain
PfamPF031066.4E-2353110IPR003657WRKY domain
SuperFamilySSF525404.94E-39266502IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.2E-45268528IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.7E-9273372IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.3E-16280295No hitNo description
PRINTSPR003643.3E-16353367No hitNo description
PRINTSPR003643.3E-16445459No hitNo description
SuperFamilySSF520582.81E-28642805IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.1E-17648760IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138552.0E-10666723IPR001611Leucine-rich repeat
PRINTSPR003643.3E-16710726No hitNo description
Gene3DG3DSA:3.80.10.102.7E-5790860IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.7E-59161026IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.81E-289201030IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.7E-510731114IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
PQESMEKMSS KEKGVASNRK SYEHLWQQDR NSPIKRKRSN PQTTEVVVPE LLDDGYSWRK  60
YGQKEILGSK YPRSYFRCTY KEEGCAAVKK VQRIDDGDAY QISYKGLHTC SNGKKIMPFA  120
AGSTSGASDS QPFKISFGMD EYRPLEVPTA LTMTESFTIT GIPFFGSKGT NTPDSEREAL  180
KSSQIHNADV TNQTRQEESI IPLTTISNKS SKPVSTDSTF SENDKRKKEG EIKTSSTHCR  240
LRNLGGDPDF NSLPTVKYSA STDCNLQKLL SAFRDVEVKK IGICGTGGIG KTTLMKSFLS  300
RNFIKRLFDL VLWVTIPRCS SRRTIQNSLV QQLSLNVPKI KSDDEVAMIL LQTLLARKFV  360
LFLDNVSEYI DIPMVGIPVG NLDNDYMIIL TTRSVNICEA MEVDRIIEAE VLTREESLQL  420
FRFHVGHLMD SEDIEPYGRA IVNECSGLPL VIKVAGSALR MDDSIFAWKH TLKEILLTNS  480
LRVLKIGYDR LKDNDNRSSF LYTALFTESK AVKISSLIEY LVDEGIVAGS TSDARRRGHD  540
IIKHLIDVSL LQCSNDGLMV EMHGFLHDLA LVILSDAKGL QMLLSRYFRS ILSQKNLLSL  600
ISNPTFVQPE SSEREKVSPS DGHRSILKAG EDLSEPPLEE AWEEAKMVFL MDNTLSNLPK  660
RPACSKLLTL FLQRNSSLRV IPPSFFENMS SLQILNLSKT RIKSLPQSLS KLECLQVLIL  720
RNCERLLFLP PAIVALKNLL VLDVHGTEIC QLPDQICELV CLVHLEVCFY GSMDEDECAM  780
LPSQLISKGI FSKLIKLKEL SINVYPGDPR WSKIASDVTT EVSNLKLCSL SFHFPEAKHL  840
EYFINASPAW LHRTLTRFDF VVGHDVKRVV SRVSDDLEHE YHQQDRCLRF VDGDDMPDAV  900
RKVLSQATAF YVDHHLTAQS LTQFGRATIN DLKFCVVRDC PKLKAIVNTT KLTGNCFPFL  960
ELLSIHNSWN LSWIWMGPVR AGSLSMLKRI SIHSCPKLEF ILCRSMVAVL SNLEELIVED  1020
CQSLKNVIRN KDQSSADDDS DFSESNVADF NSISGDVVAK DQMEVDPPDS AELRIKVLKL  1080
HYLPKLVNIW DGGDFPCLEY FSVYNCPRLK NLGLKYQDEV TIKEIKAETC WWNGLEWGDP  1140
ALLPKLQVRF KEIQTDDIWD TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-1847110368OsWRKY45
6j5t_C1e-17275851179758Disease resistance RPP13-like protein 4
6j5t_F1e-17275851179758Disease resistance RPP13-like protein 4
6j5t_G1e-17275851179758Disease resistance RPP13-like protein 4
6j5t_L1e-17275851179758Disease resistance RPP13-like protein 4
6j5t_O1e-17275851179758Disease resistance RPP13-like protein 4
6j5u_A1e-17275851179758Disease resistance RPP13-like protein 4
6j5v_A1e-17275851179758Disease resistance RPP13-like protein 4
6j5w_A1e-17275851179758Disease resistance RPP13-like protein 4
6j6i_C1e-17275851179758Disease resistance RPP13-like protein 4
6j6i_F1e-17275851179758Disease resistance RPP13-like protein 4
6j6i_G1e-17275851179758Disease resistance RPP13-like protein 4
6j6i_L1e-17275851179758Disease resistance RPP13-like protein 4
6j6i_O1e-17275851179758Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861126.10.0probable disease resistance protein At4g27220
TrEMBLA0A0K9RNI40.0A0A0K9RNI4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010673258.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-21WRKY DNA-binding protein 30