PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046520_nxcc.t1
Common NameSOVF_046520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 1159aa    MW: 130986 Da    PI: 6.6675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046520_nxcc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.2e-2552111159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqKe+ gs++prsY+rCt++  gC + kkv+r + d+++ +i Y+g H+++
  Sp_046520_nxcc.t1  52 LDDGYSWRKYGQKEILGSKYPRSYFRCTYKeeGCAAVKKVQRID-DGDAYQISYKGLHTCS 111
                        59***************************9999**********9.**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2343111IPR003657WRKY domain
PROSITE profilePS5081118.84247108IPR003657WRKY domain
SuperFamilySSF1182909.42E-2250111IPR003657WRKY domain
SMARTSM007748.7E-3452112IPR003657WRKY domain
PfamPF031066.3E-2353110IPR003657WRKY domain
SuperFamilySSF525405.0E-39263499IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.2E-45265525IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.7E-9270369IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.3E-16277292No hitNo description
PRINTSPR003643.3E-16350364No hitNo description
PRINTSPR003643.3E-16442456No hitNo description
Gene3DG3DSA:3.80.10.102.9E-21631802IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.62E-28639802IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138552.1E-10663720IPR001611Leucine-rich repeat
PRINTSPR003643.3E-16707723No hitNo description
SuperFamilySSF520581.62E-289171027IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.9E-219721014IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
PQESMEKMSS KEKGVASNRK SYEHLWQQDR NSPIKRKRSN PQTTEVVVPE LLDDGYSWRK  60
YGQKEILGSK YPRSYFRCTY KEEGCAAVKK VQRIDDGDAY QISYKGLHTC SNGKKIMPGS  120
TSGASDSQPF KISFGMDEYR PLEVPTALTM TESFTITGIP FFGSKGTNTP DSEREALKSS  180
QIHNADVTNQ TRQEESIIPL TTISNKSSKP VSTDSTFSEN DKRKKEGEIK TSSTHCRLRN  240
LGGDPDFNSL PTVKYSASTD CNLQKLLSAF RDVEVKKIGI CGTGGIGKTT LMKSFLSRNF  300
IKRLFDLVLW VTIPRCSSRR TIQNSLVQQL SLNVPKIKSD DEVAMILLQT LLARKFVLFL  360
DNVSEYIDIP MVGIPVGNLD NDYMIILTTR SVNICEAMEV DRIIEAEVLT REESLQLFRF  420
HVGHLMDSED IEPYGRAIVN ECSGLPLVIK VAGSALRMDD SIFAWKHTLK EILLTNSLRV  480
LKIGYDRLKD NDNRSSFLYT ALFTESKAVK ISSLIEYLVD EGIVAGSTSD ARRRGHDIIK  540
HLIDVSLLQC SNDGLMVEMH GFLHDLALVI LSDAKGLQML LSRYFRSILS QKNLLSLISN  600
PTFVQPESSE REKVSPSDGH RSILKAGEDL SEPPLEEAWE EAKMVFLMDN TLSNLPKRPA  660
CSKLLTLFLQ RNSSLRVIPP SFFENMSSLQ ILNLSKTRIK SLPQSLSKLE CLQVLILRNC  720
ERLLFLPPAI VALKNLLVLD VHGTEICQLP DQICELVCLV HLEVCFYGSM DEDECAMLPS  780
QLISKGIFSK LIKLKELSIN VYPGDPRWSK IASDVTTEVS NLKLCSLSFH FPEAKHLEYF  840
INASPAWLHR TLTRFDFVVG HDVKRVVSRV SDDLEHEYHQ QDRCLRFVDG DDMPDAVRKV  900
LSQATAFYVD HHLTAQSLTQ FGRATINDLK FCVVRDCPKL KAIVNTTKLT GNCFPFLELL  960
SIHNSWNLSW IWMGPVRAGS LSMLKRISIH SCPKLEFILC RSMVAVLSNL EELIVEDCQS  1020
LKNVIRNKDQ SSADDDSDFS ESNVADFNSI SGDVVAKDQM EVDPPDSAEL RIKVLKLHYL  1080
PKLVNIWDGG DFPCLEYFSV YNCPRLKNLG LKYQDEVTIK EIKAETCWWN GLEWGDPALL  1140
PKLQVRFKEI QTDDIWDTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-1847110368OsWRKY45
6j5t_C1e-17272848179758Disease resistance RPP13-like protein 4
6j5t_F1e-17272848179758Disease resistance RPP13-like protein 4
6j5t_G1e-17272848179758Disease resistance RPP13-like protein 4
6j5t_L1e-17272848179758Disease resistance RPP13-like protein 4
6j5t_O1e-17272848179758Disease resistance RPP13-like protein 4
6j5u_A1e-17272848179758Disease resistance RPP13-like protein 4
6j5v_A1e-17272848179758Disease resistance RPP13-like protein 4
6j5w_A1e-17272848179758Disease resistance RPP13-like protein 4
6j6i_C1e-17272848179758Disease resistance RPP13-like protein 4
6j6i_F1e-17272848179758Disease resistance RPP13-like protein 4
6j6i_G1e-17272848179758Disease resistance RPP13-like protein 4
6j6i_L1e-17272848179758Disease resistance RPP13-like protein 4
6j6i_O1e-17272848179758Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861126.10.0probable disease resistance protein At4g27220
TrEMBLA0A0K9RNJ40.0A0A0K9RNJ4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010673258.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-21WRKY DNA-binding protein 30