PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_045090_gksa.t1
Common NameSOVF_045090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 314aa    MW: 35942.1 Da    PI: 5.5726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_045090_gksa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.9e-50101381129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF P+deelv++yL kk+++++     ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ +
  Sp_045090_gksa.t1  10 LPPGFRFYPSDEELVCHYLYKKIANEEALK-GTLVEIDLHTCEPWQLPEVAKLNTTEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRVI 100
                        79***********************99544.78***************88888999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        l+  ++e+vg++ktLvfyk+rap+g kt W+mhe+rle
  Sp_045090_gksa.t1 101 LEPrTRETVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138
                        *9867888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-608156IPR003441NAC domain
PROSITE profilePS5100557.60410156IPR003441NAC domain
PfamPF023651.1E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEEALKG TLVEIDLHTC EPWQLPEVAK  60
LNTTEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRVI LEPRTRETVG MRKTLVFYKN  120
RAPNGIKTGW IMHEFRLESP HMPPKEDWVL CRVFHKSKSE ENNNNNNNNQ CQHTYEHNTT  180
TTSPPTCYTC QQQTNSSSNY SHPIILPPHQ ESSIILTNNN PNNIINNLIT TSPSSLNPII  240
PMSYSWSDLV SSSVKNDEDE YGGLLWDIEM DEDQSSKLGD NNGDLHNVPP SCCLPQLGFG  300
DVRFDQDDCG VVFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-48916216171NO APICAL MERISTEM PROTEIN
1ut4_B4e-48916216171NO APICAL MERISTEM PROTEIN
1ut7_A4e-48916216171NO APICAL MERISTEM PROTEIN
1ut7_B4e-48916216171NO APICAL MERISTEM PROTEIN
3swm_A5e-48916219174NAC domain-containing protein 19
3swm_B5e-48916219174NAC domain-containing protein 19
3swm_C5e-48916219174NAC domain-containing protein 19
3swm_D5e-48916219174NAC domain-containing protein 19
3swp_A5e-48916219174NAC domain-containing protein 19
3swp_B5e-48916219174NAC domain-containing protein 19
3swp_C5e-48916219174NAC domain-containing protein 19
3swp_D5e-48916219174NAC domain-containing protein 19
4dul_A4e-48916216171NAC domain-containing protein 19
4dul_B4e-48916216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854992.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE68e-63NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0K9RP290.0A0A0K9RP29_SPIOL; Uncharacterized protein
STRINGXP_010679326.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-90NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]