PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_044260_cngh.t1

Common Name

SOVF_044260

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

WRKY

Protein Properties

Length: 351aa MW: 39218.1 Da PI: 7.0331

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_044260_cngh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.9	9.9e-34	204	261	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Sp_044260_cngh.t1 204 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSFQDPSTVITTYEGQHNHP 261 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-35	188	263	IPR003657	WRKY domain
SuperFamily	SSF118290	9.55E-30	195	263	IPR003657	WRKY domain
PROSITE profile	PS50811	32.742	198	263	IPR003657	WRKY domain
SMART	SM00774	2.3E-39	203	262	IPR003657	WRKY domain
Pfam	PF03106	2.4E-26	204	261	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MSNEARNYYH NPFNNHSFMS NEDPQAILDT TNYFSFCDNP SNNSSSSYLS SQVTQDGLTP 60 CLDPSNNDNN NNYYFNDFLH GSSMDYPTLA RSVGLSPTSS EVFSSVVDEN PAMTKEKEAM 120 MAVVGHGENN PSTPNSSISS SSTEAAASVD DGSVGKKEDK HQSKASHDQD ELKKRNNKGK 180 KKGEKKQREA RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCSVKKRV 240 ERSFQDPSTV ITTYEGQHNH PIPATLRGHA AALFPHYSML APPPPPPSSN FPHELLAQLG 300 HCGSMSSAGV SPFPQFSYLQ QNPRHNNQQL QTDDYGLLQD VVPPFLLKQE P

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MSNEARNYYH NPFNNHSFMS NEDPQAILDT TNYFSFCDNP SNNSSSSYLS SQVTQDGLTP  60
CLDPSNNDNN NNYYFNDFLH GSSMDYPTLA RSVGLSPTSS EVFSSVVDEN PAMTKEKEAM  120
MAVVGHGENN PSTPNSSISS SSTEAAASVD DGSVGKKEDK HQSKASHDQD ELKKRNNKGK  180
KKGEKKQREA RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCSVKKRV  240
ERSFQDPSTV ITTYEGQHNH PIPATLRGHA AALFPHYSML APPPPPPSSN FPHELLAQLG  300
HCGSMSSAGV SPFPQFSYLQ QNPRHNNQQL QTDDYGLLQD VVPPFLLKQE P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-30	193	264	7	78	Probable WRKY transcription factor 4
2lex_A	5e-30	193	264	7	78	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857341.1	0.0	probable WRKY transcription factor 28
TrEMBL	A0A0K9RP71	0.0	A0A0K9RP71_SPIOL; Uncharacterized protein
STRING	XP_010666507.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	2e-58	WRKY DNA-binding protein 28