PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_042600_zrfx.t1
Common NameSOVF_042600
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 325aa    MW: 36899.2 Da    PI: 4.4528
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_042600_zrfx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07343337
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                          C+ ++ + + l+Ce ++  lC  C  e+H+       H
  Sp_042600_zrfx.t1  3 LEECDYCSINAAVLYCEADSANLCLLCDREIHSAnslslkH 43
                       578*****999*********************655555555 PP
2CCT62.71.1e-21277320144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R +a+lRYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk++
  Sp_042600_zrfx.t1 277 RGKAMLRYKEKKKSRRYDKHIRYESRKARADNRQRVKGRFVKAN 320
                        7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.1E-10148IPR000315B-box-type zinc finger
PROSITE profilePS501199.869148IPR000315B-box-type zinc finger
PfamPF006431.5E-5445IPR000315B-box-type zinc finger
CDDcd000211.91E-7636No hitNo description
PfamPF062036.5E-16277319IPR010402CCT domain
PROSITE profilePS5101714.803277319IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKLEECDYCS INAAVLYCEA DSANLCLLCD REIHSANSLS LKHLRIPRFG TPDPNSEAKS  60
SIDGLPSAIE LAPIWGISDL VVPCLGDDEK DAVFRQLVKL SKWDLEEREN DYSSEFGPGT  120
PSLDTGDGSE MLMHNMPFTS LLMKEGERSF AEDRDFLWDF EPDYQPPQNW DGEWGGPMDL  180
EEPSCTSTGI PDDVSDMQCS RTLKGSSSKD DGINQKMDNE VYVTVDNCNV PDVGASSDTK  240
VIKPEVIDGE QNMQFMEWPY WRKPLNTADI EQLAENRGKA MLRYKEKKKS RRYDKHIRYE  300
SRKARADNRQ RVKGRFVKAN ESPEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849983.10.0zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A0K9RRF80.0A0A0K9RRF8_SPIOL; Uncharacterized protein
STRINGXP_010682992.11e-177(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.12e-31B-box type zinc finger protein with CCT domain