PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_042400_oxwq.t1
Common NameSOVF_042400
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 396aa    MW: 43754.2 Da    PI: 6.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_042400_oxwq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000452612991255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Sp_042400_oxwq.t1 261 RKEKLGDRITSLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 299
                        6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.884249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-10259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-5259303No hitNo description
Gene3DG3DSA:4.10.280.107.7E-7263305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAAGNPSWWP NINNNLMRPP ILSSHHHQPP PLLPPPSSFL APPLNNNNNN HHDDDESNNN  60
VLFHAQYNTS IPLVAASSSS WLHDHSTNHH HDDQQQHHHQ QLPESWSNLL LGGVFFEEEA  120
KKMETTNWEE QQETSVNSYN YSDQEFQLAV AANKANWSHH HLPQLNNIVP VSSPQSCVTS  180
FSTSSTNNNN TNNNNNNSNN SNNNNNGLLD FSSSICSENL HSRQPPPTPP ALDRSTECNS  240
GATKKAKVQP SSTPSTAFKV RKEKLGDRIT SLHQLVSPFG KTDTASVLLE AIGYIRFLQS  300
QIEALSLPYL NNGAGNKMQP HPIKGERKCI FPEDPGQLLN DNCLKRKGDV VVCDLCKEAK  360
DLRSRGLCLV PVSCTLHVGS ENGADYWAPA LGGGFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860293.10.0transcription factor bHLH68-like
SwissprotQ8S3D12e-68BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0K9RPU80.0A0A0K9RPU8_SPIOL; Uncharacterized protein
STRINGXP_010688253.11e-124(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.18e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]