PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_041430_wwou.t3
Common NameSOVF_041430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 137aa    MW: 15412.7 Da    PI: 8.6975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_041430_wwou.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.8e-0633721054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       + R +++ +++ +L++l+ +      +K + a++L +A+eYI+ L
  Sp_041430_wwou.t3 33 KERKEKLGEKITTLQQLVSPY-----GKTDTASVLFEAMEYIRFL 72
                       778899999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.8E-102281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.1632372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-122585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-62977No hitNo description
SMARTSM003530.00122978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MTELKRTVRP IDQDNFTSIE AKRQKVDLSM SSKERKEKLG EKITTLQQLV SPYGKTDTAS  60
VLFEAMEYIR FLHEQVKVLS APYLHNTPVT NIEFQEAVHY NLRSKGLCLV PIECTAGLAG  120
SNGADIWAPI KTGSPRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845541.11e-100transcription factor bHLH153 isoform X1
SwissprotQ7XJU24e-51BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0K9RQ781e-98A0A0K9RQ78_SPIOL; Uncharacterized protein
STRINGXP_010672412.11e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-53bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]