PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_041130_hpja.t2
Common NameSOVF_041130
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 508aa    MW: 55049.1 Da    PI: 6.7435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_041130_hpja.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-063994371154
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sp_041130_hpja.t2 399 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 437
                        5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.449388437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.48E-7398441No hitNo description
SuperFamilySSF474595.23E-10398443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024399443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-8402441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MAEDYCGGAN WWDSTSTNRS RFDGGGVGVG GGGSSSTSST TTLSNSGGGA GYGWLTEGPT  60
AVDNKMDASS LQLVGLGLSS QAMVEWNQQQ TAILRSPEKA ENSFRSMLQE GMGLSTNFQQ  120
DASGGGGGGG GGGGGGGVMF GGNNSPQLHQ WRPDKLFPSN DDSNSEFKQL GRGFSLDNQP  180
QFSPSGSSIE STVTCQGLTA PSSFQLDSSS TSSVFGSPSS ILQGLMGTEQ HSQQQHAQQQ  240
QQQHAQQQQQ QQQQQQQQQQ QNSSNYQHNY FGMGASNDHH QQSQLPSPWA KVPQFLRATS  300
PKQQQQQQQP PQQQQNQLHF INNAPYWSAS APLTDVRPNF FSSLQGAQLP NMPTFEEKPK  360
TTMEVRDTNS MVKKNGPENS TKRTRNTDGA SSTLPPFKVR KEKMGDRITA LQQLVSPFGK  420
TDTASVLSEA IEYIKFLHEQ VLSNPYLKSG GSYQQHQPSN EKAKIDSDGP KQDLRSRGLC  480
LVPVSSTFPV THETTVDFWT PTFGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852837.10.0transcription factor bHLH123 isoform X2
TrEMBLA0A0K9RQ940.0A0A0K9RQ94_SPIOL; Uncharacterized protein
STRINGXP_010694302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.18e-66bHLH family protein