PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_040880_ozxu.t1
Common NameSOVF_040880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 491aa    MW: 57041.9 Da    PI: 7.5163
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_040880_ozxu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.81.1e-2650134187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+kqe++aL+++r+em+ ++r++  k++lW+e+s++m e g++rs+ +Ck+k+en+ k++k++k+ + +r++++   ++yfdqlea
  Sp_040880_ozxu.t1  50 RWPKQETMALLRIRSEMDFAFRDTGFKAHLWDEISRRMVELGYHRSAHKCKQKFENIYKYHKRLKNCSYSRSNRKA--YRYFDQLEA 134
                        8*********************************************************************976665..*******85 PP
2trihelix94.21.3e-29320404186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+k+ev aLi+ +++me +++r  +k+p We++s  mr  g+ r++k+Ckekwen+nk+y+++k+++k r + +s+tcpyf+ l+
  Sp_040880_ozxu.t1 320 RWPKEEVEALIKTKTNMELEYQRVGQKGPMWEDISTTMRNFGYDRNAKRCKEKWENINKYYRRVKDSNKHR-NAESKTCPYFHLLD 404
                        8********************************************************************87.78889******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.30643107IPR017877Myb-like domain
SMARTSM007170.002647109IPR001005SANT/Myb domain
CDDcd122033.80E-2049114No hitNo description
PfamPF138373.1E-1749135No hitNo description
PROSITE profilePS500907.445313377IPR017877Myb-like domain
SMARTSM007177.6317379IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-4318376IPR009057Homeodomain-like
CDDcd122031.58E-22319384No hitNo description
PfamPF138373.7E-20319406No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVEISGERRE NEVVKSEKVG VAIEERENDD GVAEAELAVA VAERNSAANR WPKQETMALL  60
RIRSEMDFAF RDTGFKAHLW DEISRRMVEL GYHRSAHKCK QKFENIYKYH KRLKNCSYSR  120
SNRKAYRYFD QLEALGNRQI SFQASASEPA DTSMNDTPYV VSPIYSHPQS VSQLTMPSSV  180
NFDPFTISTS TISTSGSESE GARTKKRKWV DYVDILMKSV LEKQEALQNK FLEAVDKHER  240
ERQAREKAWK MQDMDRIKKE HELLMQERSI SAAKDAAIGF LQKVFEQGKF SGPIMENLSQ  300
EMSIVCNKEK DNNGEIFSSR WPKEEVEALI KTKTNMELEY QRVGQKGPMW EDISTTMRNF  360
GYDRNAKRCK EKWENINKYY RRVKDSNKHR NAESKTCPYF HLLDQLHNLK TKRFDNNSSE  420
NSGSNMRPEE LLLHMMNHHH SRQQQQEQAV LHQEQGDLNM QNGKLNHDEE AGNDAEGDYH  480
VVAHNPLAVS V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857056.10.0trihelix transcription factor GTL1-like
SwissprotQ391177e-99TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0K9RRY00.0A0A0K9RRY0_SPIOL; Uncharacterized protein
STRINGXP_010680281.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.26e-98Trihelix family protein