PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_040680_pddx.t1
Common NameSOVF_040680
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29051 Da    PI: 9.307
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_040680_pddx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Sp_040680_pddx.t1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFAS 59
                       79***********************************************86 PP
2K-box96.44.5e-3282172999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + +++ e++++e+ kLk++ e+Lqr+qR+llGedL++L++keL qLe+qLe+slk+iRs+K++ +++q+ +lq+ke++l e+nk+L+++l+
  Sp_040680_pddx.t1  82 KPSKELENSYREYLKLKARHESLQRTQRNLLGEDLGPLNVKELDQLERQLESSLKQIRSTKTQSMVDQLTDLQNKEHSLMEANKSLKTELD 172
                        467889*********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.319161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002655.08E-46277No hitNo description
SuperFamilySSF554553.66E-33284IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.1E-2784171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.26387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFASG  60
PSMLKTLERY QKCSYGGVEV NKPSKELENS YREYLKLKAR HESLQRTQRN LLGEDLGPLN  120
VKELDQLERQ LESSLKQIRS TKTQSMVDQL TDLQNKEHSL MEANKSLKTE LDRIMVKDAQ  180
FRQPWDNADQ NVHYGQQHSQ SQGLLNFQPL GCNPTLQIGY NPETSDQMNV GTTHNQVTQV  240
PGFLPGWMQG GCFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-32751711101Developmental protein SEPALLATA 3
4ox0_B2e-32751711101Developmental protein SEPALLATA 3
4ox0_C2e-32751711101Developmental protein SEPALLATA 3
4ox0_D2e-32751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818682e-56LN681868.1 Cucumis melo genomic scaffold, anchoredscaffold00090.
GenBankLN7132612e-56LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837825.10.0developmental protein SEPALLATA 1-like
SwissprotQ8LLR21e-126MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0K9RQF50.0A0A0K9RQF5_SPIOL; Uncharacterized protein
STRINGXP_010694117.11e-165(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-118MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]