PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_040570_hxzp.t1
Common NameSOVF_040570
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 1046aa    MW: 115884 Da    PI: 5.1607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_040570_hxzp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-184995148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Sp_040570_hxzp.t1 49 RGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-ERTDVQCLHRWQKVL 95
                       89*****************************9.************986 PP
2Myb_DNA-binding64.22.5e-20101147148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEde +v++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Sp_040570_hxzp.t1 101 KGPWSKEEDEVIVQLVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 147
                        79******************************.*************97 PP
3Myb_DNA-binding50.74.1e-16153195145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        + +WT+eE++ l++a++++G++ W+   ++++ gRt++ +k++w+
  Sp_040570_hxzp.t1 153 KEAWTQEEELVLIRAHQMHGNR-WAELTKYLP-GRTDNAIKNHWN 195
                        579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1114495IPR017930Myb domain
SuperFamilySSF466896.39E-1645102IPR009057Homeodomain-like
SMARTSM007173.6E-154897IPR001005SANT/Myb domain
PfamPF002494.8E-164995IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2551112IPR009057Homeodomain-like
CDDcd001675.54E-145295No hitNo description
PROSITE profilePS5129433.01296151IPR017930Myb domain
SuperFamilySSF466891.09E-3198194IPR009057Homeodomain-like
SMARTSM007174.6E-19100149IPR001005SANT/Myb domain
PfamPF002492.2E-18101147IPR001005SANT/Myb domain
CDDcd001671.59E-16103147No hitNo description
Gene3DG3DSA:1.10.10.601.3E-27113155IPR009057Homeodomain-like
SMARTSM007175.0E-15152200IPR001005SANT/Myb domain
PROSITE profilePS5129420.16152202IPR017930Myb domain
PfamPF002492.4E-14153196IPR001005SANT/Myb domain
CDDcd001671.64E-11155195No hitNo description
Gene3DG3DSA:1.10.10.601.7E-21156202IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MESDRKIAAS HPPPAPLAPP GSLNGANNAF PRVRPMHGRT SGPTRRSTRG QWTPEEDEIL  60
RKAVQRFKGK NWKKIAECFK ERTDVQCLHR WQKVLNPELI KGPWSKEEDE VIVQLVNKYG  120
PKKWSTIAQH LPGRIGKQCR ERWHNHLNPS INKEAWTQEE ELVLIRAHQM HGNRWAELTK  180
YLPGRTDNAI KNHWNSSVKK KLDSYIASGL LAQFQSLPVV SHQSQSMPSA SLLVQQSSGD  240
GSVFKDGAEV DQNSECSQVA CSQTASDMSN KEDFLLCEES DHGKFQNTSP TASCSEQYYT  300
EDITITIPDI PHEFNCSSKY LEDNISREPG TCAAENSSFG TFSLPNFSFA DLATDSLSGN  360
YYIADPMSDI VPGPSHQSVE YDALASVNNV AANLEASGQK RKAEEGCSEL LLEHEGGDGC  420
PGNFSDIIDM DRFREFLGYQ TIYQHSEPSG NVDLRPNTPL DTLVEALNCE HLSTIPFEVS  480
VENGFMIDTK EYDQINDSGA GSEAKDSANV DEGHVPAINN SGSPLTEQTA SKALSRLVSV  540
NTFGLETSDN QQTHSNVVER PMKATCKQEA GILCYEHPRI PSLDVPFYSC DLADAHQEYS  600
PLGVRQYMHS KNSMTPFKLW DSPSSDDSPD AKLKSAAKTF GSTPSILKKR HRDLLSPLSP  660
LSERRCDKKT GSSSKQVFLC TSRLTNEFSR LDVMFDEADD QNNDQNGKEK ISKPESPSYD  720
QNIHASVEDK ENICPALEWK REEASHNQAE SGDRTLEENK KDFRDLDKEE NLEQHPEKSV  780
REDCASETVK NTSLKGVLVE QYLRDTQNSS SDGGGPKAGS EAGDRALEVH GLKNTSKQTA  840
MSDLMTSKTK CIVSPPLLGQ KKSCYQSVSA VTSVMVDSLV NEVGSENLNI FGGTPFRRSL  900
ESPSAWKSPW YFSSFIPCSR FDSDTMIGDI NGIFMSPGDR SLDAIGLVNQ INEESAGAYA  960
DARKVLGSET PESILRQRCL KNQNSEGDIN YFSNSQLDGR QQSVSSERRV LDFSECETPA  1020
KTMEKGKSVI TTSLSSPAPC LLKSYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69492026159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69492026159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835419.10.0transcription factor MYB3R-1-like
RefseqXP_021835426.10.0transcription factor MYB3R-1-like
TrEMBLA0A0K9RQE90.0A0A0K9RQE9_SPIOL; Uncharacterized protein
STRINGXP_010667918.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-106myb domain protein 3r-4