PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_039640_dehz.t1
Common NameSOVF_039640
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 485aa    MW: 53102.9 Da    PI: 7.218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_039640_dehz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.7e-28134191259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +D y+WrKYGqK+vkgs  +rsYYrCt+ +C++kkkv++ ++ +k+++++Y+++Hnhe
  Sp_039640_dehz.t1 134 SDVYSWRKYGQKQVKGSGSSRSYYRCTHLSCSAKKKVQHLDKSGKIIDVVYKDDHNHE 191
                        79*******************************************************8 PP
2WRKY102.13.1e-32346403259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK+vkg+++prsYYrC+s+gCpv+k+ver++++ ++v++tYegeH+h+
  Sp_039640_dehz.t1 346 SDGYRWRKYGQKMVKGNPYPRSYYRCSSTGCPVRKHVERATDNSTAVIVTYEGEHDHD 403
                        7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-24130193IPR003657WRKY domain
SuperFamilySSF1182906.15E-23131193IPR003657WRKY domain
SMARTSM007744.5E-27133192IPR003657WRKY domain
PROSITE profilePS5081121.631134193IPR003657WRKY domain
PfamPF031063.0E-21135191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-33331405IPR003657WRKY domain
PROSITE profilePS5081134.452340405IPR003657WRKY domain
SuperFamilySSF1182903.53E-28341405IPR003657WRKY domain
SMARTSM007749.8E-38345404IPR003657WRKY domain
PfamPF031063.4E-26347402IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEEEPKPQKQ TNPEINSEIN NKTSDNSKTV TLASSCSNST SFSKLLQGVV MAANSTISSD  60
PSLDNSGFQG QFGMSHQEAL ANVTAKAAQS QSHTERKLQS FSEDKVVEEH EINKINSSCN  120
TDESPDDVPR TPTSDVYSWR KYGQKQVKGS GSSRSYYRCT HLSCSAKKKV QHLDKSGKII  180
DVVYKDDHNH EPPQILKAST RKKDSAPRAL NIASVQNSDS PHSLTCESEV KPLVVLLPLE  240
CPGNNLKSAA GTPSSDVEEQ HTKTVDTTPR PESELAIVPV VEEHSEVRSG NTSERAMIDP  300
MKELDVAPLK KRRIKERGKA CSEPVYRTFK DPKIVMHAAG DAAVSSDGYR WRKYGQKMVK  360
GNPYPRSYYR CSSTGCPVRK HVERATDNST AVIVTYEGEH DHDVPVPKRQ YHHSSPNATT  420
STTASGANTV LDKSESKSPC QASEEERPKD LESGPGEEKG SEAGGDKVLE SARTLLSIGI  480
ELKSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-29333405274WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309314KKRRIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864534.10.0probable WRKY transcription factor 3
TrEMBLA0A0K9RSK30.0A0A0K9RSK3_SPIOL; Uncharacterized protein
STRINGXP_010667565.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-59WRKY DNA-binding protein 4