PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_039590_pigj.t1 | ||||||||
Common Name | SOVF_039590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 751aa MW: 82364.9 Da PI: 5.7977 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.1 | 6.6e-32 | 280 | 337 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpv+kkvers d++++ei+Y++ H h+k Sp_039590_pigj.t1 280 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVRKKVERSL-DGHITEIIYKNAHSHPK 337 8****************************************.***************85 PP | |||||||
2 | WRKY | 103.8 | 9.6e-33 | 499 | 557 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+versae k++++tYeg+Hnhe Sp_039590_pigj.t1 499 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCTVRKHVERSAESLKFIITTYEGKHNHE 557 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-28 | 272 | 338 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.399 | 274 | 338 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 275 | 338 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-36 | 279 | 337 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 280 | 336 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.9E-35 | 484 | 559 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-28 | 492 | 559 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.127 | 494 | 559 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-37 | 499 | 558 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-25 | 500 | 557 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 751 aa Download sequence Send to blast |
MADTEEGLDE WRELMMGSKG LFSGFAPQNC GTESMNEFFN GEAIENSLNF ENGSNCSNIV 60 NNSSVIKNGM SIAERRAMKC GFSASKICTP RFRTSGLLSS PGGGGSCSPF MTVASGISPH 120 TLLESPMLLP NSQLSPTTGS FASRPIKEEF QMLISESSLD AEKGSDGGSS IMFKPHTETT 180 SLAGFHDEDN QLCKDVCTDS HYGYSPPERK PLDDLIVNSN SSTFQPCESN IVACPQMTHE 240 NGSPMGDDSG THQIDQEYHD SLDGGQNGIY PNTETARIAE DGYNWRKYGQ KQVKGSEYPR 300 SYYKCTHPNC PVRKKVERSL DGHITEIIYK NAHSHPKPQQ CRKLTSGLLP FNETSSELGD 360 GNGNGSCMKV NGVWRSTQSG YNNGVVSDWG KTDGLVEMTS STSALTEISD LLSTNQGKPM 420 GVFESAGTPE FSSTPATHED DEEDAATQGG GFLIGHDSEI EPDLKRRKKD GCFAEASLGS 480 RAVREPRVVV QVESEIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTTPGC TVRKHVERSA 540 ESLKFIITTY EGKHNHEIPA ARNSAHLNSG TGNLPASSTN TQTALALPRN SHLLPKPEPH 600 SQDFPLHFDT KIECNNDFYS PNFFGNPPFY QMKFPAMPNN TQYAPFGLSN HHPGYASSSI 660 VPSISELSFP LSLGYPRSSI AGYCNPEIEQ SHSSNQSLYA AGHHQLSESD VKFLRPKQER 720 MDDSFETGLN YIDHTNTSSS VYNHAMGNFR P |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-33 | 265 | 560 | 4 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-33 | 265 | 560 | 4 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021851868.1 | 0.0 | WRKY transcription factor SUSIBA2-like | ||||
Refseq | XP_021851869.1 | 0.0 | WRKY transcription factor SUSIBA2-like | ||||
TrEMBL | A0A0K9RQN5 | 0.0 | A0A0K9RQN5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673935.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56270.1 | 2e-90 | WRKY DNA-binding protein 2 |