PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_039590_pigj.t1
Common NameSOVF_039590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 751aa    MW: 82364.9 Da    PI: 5.7977
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_039590_pigj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-32280337260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpv+kkvers  d++++ei+Y++ H h+k
  Sp_039590_pigj.t1 280 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVRKKVERSL-DGHITEIIYKNAHSHPK 337
                        8****************************************.***************85 PP
2WRKY103.89.6e-33499557159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+versae  k++++tYeg+Hnhe
  Sp_039590_pigj.t1 499 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCTVRKHVERSAESLKFIITTYEGKHNHE 557
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28272338IPR003657WRKY domain
PROSITE profilePS5081123.399274338IPR003657WRKY domain
SuperFamilySSF1182901.44E-25275338IPR003657WRKY domain
SMARTSM007747.7E-36279337IPR003657WRKY domain
PfamPF031061.9E-24280336IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-35484559IPR003657WRKY domain
SuperFamilySSF1182903.79E-28492559IPR003657WRKY domain
PROSITE profilePS5081136.127494559IPR003657WRKY domain
SMARTSM007743.0E-37499558IPR003657WRKY domain
PfamPF031066.2E-25500557IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MADTEEGLDE WRELMMGSKG LFSGFAPQNC GTESMNEFFN GEAIENSLNF ENGSNCSNIV  60
NNSSVIKNGM SIAERRAMKC GFSASKICTP RFRTSGLLSS PGGGGSCSPF MTVASGISPH  120
TLLESPMLLP NSQLSPTTGS FASRPIKEEF QMLISESSLD AEKGSDGGSS IMFKPHTETT  180
SLAGFHDEDN QLCKDVCTDS HYGYSPPERK PLDDLIVNSN SSTFQPCESN IVACPQMTHE  240
NGSPMGDDSG THQIDQEYHD SLDGGQNGIY PNTETARIAE DGYNWRKYGQ KQVKGSEYPR  300
SYYKCTHPNC PVRKKVERSL DGHITEIIYK NAHSHPKPQQ CRKLTSGLLP FNETSSELGD  360
GNGNGSCMKV NGVWRSTQSG YNNGVVSDWG KTDGLVEMTS STSALTEISD LLSTNQGKPM  420
GVFESAGTPE FSSTPATHED DEEDAATQGG GFLIGHDSEI EPDLKRRKKD GCFAEASLGS  480
RAVREPRVVV QVESEIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTTPGC TVRKHVERSA  540
ESLKFIITTY EGKHNHEIPA ARNSAHLNSG TGNLPASSTN TQTALALPRN SHLLPKPEPH  600
SQDFPLHFDT KIECNNDFYS PNFFGNPPFY QMKFPAMPNN TQYAPFGLSN HHPGYASSSI  660
VPSISELSFP LSLGYPRSSI AGYCNPEIEQ SHSSNQSLYA AGHHQLSESD VKFLRPKQER  720
MDDSFETGLN YIDHTNTSSS VYNHAMGNFR P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-33265560478Probable WRKY transcription factor 4
2lex_A9e-33265560478Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851868.10.0WRKY transcription factor SUSIBA2-like
RefseqXP_021851869.10.0WRKY transcription factor SUSIBA2-like
TrEMBLA0A0K9RQN50.0A0A0K9RQN5_SPIOL; Uncharacterized protein
STRINGXP_010673935.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-90WRKY DNA-binding protein 2