PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_039410_rjun.t1
Common NameSOVF_039410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 423aa    MW: 47113.9 Da    PI: 7.3541
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_039410_rjun.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.24.3e-344498155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Sp_039410_rjun.t1 44 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 98
                       79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.84941101IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-324299IPR009057Homeodomain-like
SuperFamilySSF466895.02E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-234499IPR006447Myb domain, plants
PfamPF002496.6E-104697IPR001005SANT/Myb domain
PfamPF143791.6E-10148170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF143796.1E-10208233IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MFHHHTQPSM YPSPRMSAPQ ERQLFLQGGN GSRDSNLVLS TDAKPRLKWT PDLHERFVEA  60
VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NIHGQTPQTS SGANKTVVMS  120
ASGDKMPETS PSHTSSINIA PQTNKNLHIN EALHMQIEVQ RRLHEQLEVH DPVYFQFKQN  180
GLSPNAETTT AAQNLQRHHP KNSRDKDVQR RLQLRIEAQG KYLQAVLEKA QETLGKQNIG  240
VVGLEAAKLQ LSELVSKVSN QCLNLAFAEI AEEQHGTCPK QQIQPHKPMG DCSIDSCLTS  300
CDGPQQREHG MHNSELGLRP YNDTRFLEGN DFNGNLKEHA TILFPATTPQ DTGKMMFRVD  360
GACSDLSMSV GVGGDSRDQN TFQLDNKNYK LPPFSGDLDL NTQDEPDVPS SIRHLDLNGL  420
SWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-2143100158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852642.10.0myb-related protein 2-like isoform X2
TrEMBLA0A0K9RSG60.0A0A0K9RSG6_SPIOL; Uncharacterized protein
STRINGXP_010672720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-106G2-like family protein