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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sp_039410_rjun.t1 | ||||||||
| Common Name | SOVF_039410 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family | G2-like | ||||||||
| Protein Properties | Length: 423aa MW: 47113.9 Da PI: 7.3541 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 108.2 | 4.3e-34 | 44 | 98 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
Sp_039410_rjun.t1 44 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 98
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 10.849 | 41 | 101 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 4.4E-32 | 42 | 99 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 5.02E-17 | 43 | 99 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.6E-23 | 44 | 99 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 6.6E-10 | 46 | 97 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.6E-10 | 148 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Pfam | PF14379 | 6.1E-10 | 208 | 233 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 423 aa Download sequence Send to blast |
MFHHHTQPSM YPSPRMSAPQ ERQLFLQGGN GSRDSNLVLS TDAKPRLKWT PDLHERFVEA 60 VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NIHGQTPQTS SGANKTVVMS 120 ASGDKMPETS PSHTSSINIA PQTNKNLHIN EALHMQIEVQ RRLHEQLEVH DPVYFQFKQN 180 GLSPNAETTT AAQNLQRHHP KNSRDKDVQR RLQLRIEAQG KYLQAVLEKA QETLGKQNIG 240 VVGLEAAKLQ LSELVSKVSN QCLNLAFAEI AEEQHGTCPK QQIQPHKPMG DCSIDSCLTS 300 CDGPQQREHG MHNSELGLRP YNDTRFLEGN DFNGNLKEHA TILFPATTPQ DTGKMMFRVD 360 GACSDLSMSV GVGGDSRDQN TFQLDNKNYK LPPFSGDLDL NTQDEPDVPS SIRHLDLNGL 420 SWT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00331 | DAP | Transfer from AT3G04030 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021852642.1 | 0.0 | myb-related protein 2-like isoform X2 | ||||
| TrEMBL | A0A0K9RSG6 | 0.0 | A0A0K9RSG6_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010672720.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G04030.3 | 1e-106 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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