PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_038480_mosn.t1
Common NameSOVF_038480
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 361aa    MW: 40290.9 Da    PI: 5.1197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_038480_mosn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-1287139155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        r++ h e Er+RR+++ + ++ Lr  lP+ +    ++K s ++ + +Av+YI++L+
  Sp_038480_mosn.t1  87 RKVLHREYERQRRQEMANLYHSLRLTLPPeS---IQGKRSISDHVDEAVNYIQHLK 139
                        6788*************************66...********************95 PP
2HLH11.30.000642382583555
                        TS-STCHHHHHHHHHHHHHHH CS
                HLH  35 skKlsKaeiLekAveYIksLq 55 
                        ++K s ++ L +Av+YIk+L+
  Sp_038480_mosn.t1 238 QGKRSTSDHLAEAVNYIKDLE 258
                        6899**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1483158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.40886138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-987158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-987138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-787143No hitNo description
SMARTSM003530.001492144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-5232280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-5237273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MFPFQQSCEL SFKISDEGDQ FDELTNFEQD QIIMDNNASV GGLNNTQGRG RGRGRGRGRG  60
RTLSSSLLAG ISDNTNTNTN NDDENERKVL HREYERQRRQ EMANLYHSLR LTLPPESIQG  120
KRSISDHVDE AVNYIQHLKK NVKDLEEKRD ELKNSIESSI STNELGGSSN SSRVITGIIV  180
LIRESVVGFE IEISVGYEDE GRFSLARALQ VVFDEGLEVV SCTSTKFNER VIHHLQCQGK  240
RSTSDHLAEA VNYIKDLEKN IQDLSLKRDE LKSAAPEWTT AATPTTYLVG GSSHPRPRRG  300
TVVINPCLGG LDIEIEVGCE DERFALSSAL QVVFEEGLSV SSCISTKVDE RVVHKMVCEV  360
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15059RGRGRGRGRG
25060RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842275.11e-145transcription factor bHLH120-like
TrEMBLA0A0K9RR140.0A0A0K9RR14_SPIOL; Uncharacterized protein
STRINGXP_010693645.11e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-28bHLH family protein