PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_038470_dfya.t1
Common NameSOVF_038470
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 273aa    MW: 31063.3 Da    PI: 6.2554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_038470_dfya.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-1386138155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +++ h e+Er+RR+++ + ++ Lr+llP        +K s ++ L++A++YIk+L+
  Sp_038470_dfya.t1  86 KKVIHREVERQRRQEMSNLYSSLRSLLPMeY---VRGKRSVSDHLTEATRYIKDLE 138
                        5778*************************77...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1584162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.84685137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-1185142No hitNo description
PfamPF000101.2E-1086138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-1287163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-691143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MFPFQSGELS FQVSNNNLED SNFLYNQLEQ NVSVPTTTTT NLLENPQHGL NPCLKSSKTR  60
KSRSEKSIQD NNNNGDEING NDNANKKVIH REVERQRRQE MSNLYSSLRS LLPMEYVRGK  120
RSVSDHLTEA TRYIKDLEKN VKEQGEKRDN LKHSFSSLEN QINNKRDNFQ CSSSTSTTTS  180
ASSSTSDYNV SIHKFSRTIQ IEITAGVEDE DPYPISKILK LLAQQGFDVV SCVTSKLNQR  240
WIYVIYCEVD DVTSVDSCHL QEKLMSVVSS NDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842274.10.0transcription factor bHLH118-like
TrEMBLA0A0K9RR160.0A0A0K9RR16_SPIOL; Uncharacterized protein
STRINGXP_010693647.16e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.19e-33bHLH family protein