PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_036000_ggiy.t1
Common NameSOVF_036000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 775aa    MW: 84996.2 Da    PI: 5.3345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_036000_ggiy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.99.5e-1013947752374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++l++e+A+a+s+g++  a+ +Larl  +++++g++ qRla+y+ +AL++r     sel++ ++        s++++ a+  ++++sP++kf
  Sp_036000_ggiy.t1 394 KQLITEAATAISDGKNDTATDFLARLARISNSKGSSEQRLAFYMGNALRSRACP--SELSSPVNEIY-----SEDQMLAMYSLYDISPCFKF 478
                        68999************************************************9..66665444444.....5688888999********** PP

               GRAS  94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg............ppslRiTgvgspesgskeeleetgerLakfA 169
                        + l+aN  +lea+ ++     +vH+iDfd+++G+Q+++Ll+aLa+R+++            +  l++T+v+  e +++    ++++ L k+A
  Sp_036000_ggiy.t1 479 GLLAANLVMLEAITTAlqegIKVHVIDFDVGHGAQYVNLLRALAERRSQiipsagagsaagSYDLKVTVVET-EVDNRGVKDSVKDGLIKLA 569
                        ******98888888777666899**********************995555555566666588*********.5568888899********* PP

               GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                        e++g++++f+  +++r+++l+ e+L +++gEa++Vn++++lhr++desvs+ +  rde+L+ vk+l+P+ v++veqe++ n+++F++r+ e+
  Sp_036000_ggiy.t1 570 ERVGISLKFES-LTRRITELTRESLGCEEGEAIVVNFAFKLHRVPDESVSSMEnLRDELLRRVKGLNPRAVTLVEQEMNGNTAPFMTRVNES 660
                        ***********.599*********************************9755449************************************* PP

               GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyr 350
                        + yy al+dsl+ +lp+e+ +r+ +E+  +gr+  n vaceg++r+er e ++kWr+r+++aGF+  pl++++a+++++ l      + g++
  Sp_036000_ggiy.t1 661 CAYYGALLDSLDLTLPKENPDRARIEEG-IGRKMANSVACEGRDRVERAEVFGKWRARMGMAGFELKPLTQSVAESMRAKLDSARggNPGFT 751
                        ****************************.****************************************************998777899** PP

               GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                        v+eesg + +gW++r+L+++SaWr
  Sp_036000_ggiy.t1 752 VKEESGGVGFGWNGRTLTVASAWR 775
                        ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.815367753IPR005202Transcription factor GRAS
PfamPF035143.3E-98394775IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MASGFSGDVF YGGGGAGTGG GRAGMTSFRQ QQPQQQQQQQ SQGMLFSPMD QIAQRRADLL  60
MGKRSFGDFQ AYQQQILLQQ QPQHHQQQQQ QQQNPLLFLQ KHQQQQQQQQ QSQQQLSFLQ  120
QQYLMRSVKQ RTNGFASSSP ISPLSPTIDL CSPTSNNSNS LSSSSARFGV PIYQQLRQQQ  180
FQQLQQQQQQ QQQQQFLHHN NQFNNNPTNN CLIPNLSNNT SNNLINPTQS PNTGFSSLGY  240
SNYGSQQKPD PQPDNFSGGG GGGYSNLVEP KVEEESEDHK ILNTLQELEK QLLDDDDNDD  300
ENDDVSVITN SEWSETFQNL MSPSGNPSPT SPVPSPNTTT NNHACSSTSG SSNTNIITNN  360
NNMISPSPTS STSSCCSTSA PPLAPPPPET LTAKQLITEA ATAISDGKND TATDFLARLA  420
RISNSKGSSE QRLAFYMGNA LRSRACPSEL SSPVNEIYSE DQMLAMYSLY DISPCFKFGL  480
LAANLVMLEA ITTALQEGIK VHVIDFDVGH GAQYVNLLRA LAERRSQIIP SAGAGSAAGS  540
YDLKVTVVET EVDNRGVKDS VKDGLIKLAE RVGISLKFES LTRRITELTR ESLGCEEGEA  600
IVVNFAFKLH RVPDESVSSM ENLRDELLRR VKGLNPRAVT LVEQEMNGNT APFMTRVNES  660
CAYYGALLDS LDLTLPKENP DRARIEEGIG RKMANSVACE GRDRVERAEV FGKWRARMGM  720
AGFELKPLTQ SVAESMRAKL DSARGGNPGF TVKEESGGVG FGWNGRTLTV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3541677526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844242.10.0scarecrow-like protein 8
TrEMBLA0A0K9RTG00.0A0A0K9RTG0_SPIOL; Uncharacterized protein
STRINGXP_010671651.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-128SCARECROW-like 8