PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_035090_mwct.t1
Common NameSOVF_035090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 302aa    MW: 34203.9 Da    PI: 6.6808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_035090_mwct.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000181732141155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +RR ++ +++  L +llP     +  + + a++Le+A +Y+  Lq
  Sp_035090_mwct.t1 173 NRRGKLSEKIYCLGKLLPGG---HRHRKNTADMLEEAKKYVLFLQ 214
                        7******************6...5666677************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.413162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0022165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-5173217No hitNo description
Gene3DG3DSA:4.10.280.101.1E-6173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-9173228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEVASANSEV SFLSLLMAPE TATIEEDDFY ETTENFKNFL PPSSLPPSLP PLSDHDYCYY  60
YQHANNNNNN NLHFISPPPE PYFLPPSPEF STGLPDLLSF ENFVELPPPS NMYSPLPQSQ  120
YLLSQPPPSL PQQQPPRDDY SLDSILDNYL KTSKQKRKSS SMSAPASQQQ KTNRRGKLSE  180
KIYCLGKLLP GGHRHRKNTA DMLEEAKKYV LFLQAQVNSL KTMPTESRFT ESRVRVKISR  240
GIGELTKLSR QQLLRVVVNS PAAQIVMADE GWCLATAEQV ELMKRIEARQ KVIQQLMDSL  300
PL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860729.10.0uncharacterized protein LOC110799769
TrEMBLA0A0K9RTT40.0A0A0K9RTT4_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-16bHLH family protein