PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_034090_dnua.t2 | ||||||||
Common Name | SOVF_034090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | GRAS | ||||||||
Protein Properties | Length: 818aa MW: 89922.4 Da PI: 5.9148 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 291.5 | 2.3e-89 | 457 | 817 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +++L+++A+ + +g+++laq++Larl+++ s ++p+ R+a y++eAL+ l+ ++ + +a p+++ ++++++++++a+klfsevsPi +f Sp_034090_dnua.t2 457 KDQLFKAADLILTGNFSLAQEILARLNHQLSLPAKPLIRAALYVKEALQMLLLT-GNPV-AAPPSKTLTPYDVVHKMNAYKLFSEVSPITQF 546 689*************************************************98.4444.46788888999********************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak. 184 +++t+ qaIlea++ ++++HiiDfdi+ G+QW++L+q+L R++g+psl+iT++++ +s++ el ++e+L +fA+ +g+ f+ +v+ + Sp_034090_dnua.t2 547 TNFTCTQAILEALDDADAIHIIDFDIGCGAQWASLIQELPLRKRGAPSLKITALAP-SSSHPFELGLIRENLMQFANDIGIAFDLQVVNLDl 637 *******************************************************9.667999************************85443 PP GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 + ++ +l ++r++++E++aV++ + + + +s + +L+++k+ sPk+vv ++ d+ + +F ++++++l++++ +++sl+ Sp_034090_dnua.t2 638 fDPSSCSLPNFRTSEDESIAVSIPIWSSS------NRPSMLPPILEFIKQCSPKIVVSLDRVFDRCDVPFPQHLVHTLDWCTNFLESLDGL- 722 333455666778888********994333......33444556*********************************************765. PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +s+ +kvE+++++++i+n v + e++ +W++ + +aGF+p+++s+++++qa++++++++++g++ve++++slvl W++r+L Sp_034090_dnua.t2 723 NVASDIVNKVEKFFVQPRIENTVLGRVHF----PEKMPHWKNLFASAGFSPMQFSNFTETQADYVVKRTPGRGFHVEKRQASLVLSWQRREL 810 579999*****************987665....9********************************************************** PP GRAS 368 vsvSaWr 374 v++SaWr Sp_034090_dnua.t2 811 VAASAWR 817 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.753 | 430 | 797 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.8E-87 | 457 | 817 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MMRAMPYNLQ GKGVAELSGL ISQISSSLPP NWKTLDNFQE QQQQQQISEG EEDDEEEDFE 60 KQAALNIPKK LKLKLKQKQI SATQTSSVDS EPTSTLDTTS PPTSTSTLSS SFTNGQHSGN 120 KDISAGVADP SCARKEDWPS ELNDLHQGSD NVTAASSAGE RLGGGSGGGG GGIGLEDWDA 180 LFPTGDGALL PWIIGDAEDP SLGLKHLLQS GTIVDYEGNA GLGDVDQGPG FDTHSMSPPR 240 NQPQLLPHHP LAVVGNEGNG GSANFVSFIG SEFGNNGKIG LISPNCSSGV SNNGGLNTTN 300 SLILGSIPAN FQHQFEVGDE KPQIFNPQLV MNQQQAQSPG NPSFFMPPWS YCQLDQHLLQ 360 PPTKRHNPGV VLDPNLVSKN PFHDQGHDLL MRKQQVGFQQ FPMGLPPQLV PPHLQQKQMM 420 VPKLNHQQQH QHQHQHQQHF PLPGLQHQHQ LQEQAIKDQL FKAADLILTG NFSLAQEILA 480 RLNHQLSLPA KPLIRAALYV KEALQMLLLT GNPVAAPPSK TLTPYDVVHK MNAYKLFSEV 540 SPITQFTNFT CTQAILEALD DADAIHIIDF DIGCGAQWAS LIQELPLRKR GAPSLKITAL 600 APSSSHPFEL GLIRENLMQF ANDIGIAFDL QVVNLDLFDP SSCSLPNFRT SEDESIAVSI 660 PIWSSSNRPS MLPPILEFIK QCSPKIVVSL DRVFDRCDVP FPQHLVHTLD WCTNFLESLD 720 GLNVASDIVN KVEKFFVQPR IENTVLGRVH FPEKMPHWKN LFASAGFSPM QFSNFTETQA 780 DYVVKRTPGR GFHVEKRQAS LVLSWQRREL VAASAWRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-24 | 474 | 817 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021853011.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A0K9RSB8 | 0.0 | A0A0K9RSB8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010695123.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 8e-91 | GRAS family protein |