PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_034090_dnua.t2
Common NameSOVF_034090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 818aa    MW: 89922.4 Da    PI: 5.9148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_034090_dnua.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.52.3e-894578172374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +++L+++A+ + +g+++laq++Larl+++ s  ++p+ R+a y++eAL+  l+  ++ + +a p+++ ++++++++++a+klfsevsPi +f
  Sp_034090_dnua.t2 457 KDQLFKAADLILTGNFSLAQEILARLNHQLSLPAKPLIRAALYVKEALQMLLLT-GNPV-AAPPSKTLTPYDVVHKMNAYKLFSEVSPITQF 546
                        689*************************************************98.4444.46788888999********************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak. 184
                        +++t+ qaIlea++ ++++HiiDfdi+ G+QW++L+q+L  R++g+psl+iT++++ +s++  el  ++e+L +fA+ +g+ f+ +v+  + 
  Sp_034090_dnua.t2 547 TNFTCTQAILEALDDADAIHIIDFDIGCGAQWASLIQELPLRKRGAPSLKITALAP-SSSHPFELGLIRENLMQFANDIGIAFDLQVVNLDl 637
                        *******************************************************9.667999************************85443 PP

               GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         + ++ +l ++r++++E++aV++ +   +      + +s  + +L+++k+ sPk+vv  ++  d+ + +F ++++++l++++ +++sl+   
  Sp_034090_dnua.t2 638 fDPSSCSLPNFRTSEDESIAVSIPIWSSS------NRPSMLPPILEFIKQCSPKIVVSLDRVFDRCDVPFPQHLVHTLDWCTNFLESLDGL- 722
                        333455666778888********994333......33444556*********************************************765. PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                          +s+  +kvE+++++++i+n v  +        e++ +W++ + +aGF+p+++s+++++qa++++++++++g++ve++++slvl W++r+L
  Sp_034090_dnua.t2 723 NVASDIVNKVEKFFVQPRIENTVLGRVHF----PEKMPHWKNLFASAGFSPMQFSNFTETQADYVVKRTPGRGFHVEKRQASLVLSWQRREL 810
                        579999*****************987665....9********************************************************** PP

               GRAS 368 vsvSaWr 374
                        v++SaWr
  Sp_034090_dnua.t2 811 VAASAWR 817
                        ******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.753430797IPR005202Transcription factor GRAS
PfamPF035147.8E-87457817IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MMRAMPYNLQ GKGVAELSGL ISQISSSLPP NWKTLDNFQE QQQQQQISEG EEDDEEEDFE  60
KQAALNIPKK LKLKLKQKQI SATQTSSVDS EPTSTLDTTS PPTSTSTLSS SFTNGQHSGN  120
KDISAGVADP SCARKEDWPS ELNDLHQGSD NVTAASSAGE RLGGGSGGGG GGIGLEDWDA  180
LFPTGDGALL PWIIGDAEDP SLGLKHLLQS GTIVDYEGNA GLGDVDQGPG FDTHSMSPPR  240
NQPQLLPHHP LAVVGNEGNG GSANFVSFIG SEFGNNGKIG LISPNCSSGV SNNGGLNTTN  300
SLILGSIPAN FQHQFEVGDE KPQIFNPQLV MNQQQAQSPG NPSFFMPPWS YCQLDQHLLQ  360
PPTKRHNPGV VLDPNLVSKN PFHDQGHDLL MRKQQVGFQQ FPMGLPPQLV PPHLQQKQMM  420
VPKLNHQQQH QHQHQHQQHF PLPGLQHQHQ LQEQAIKDQL FKAADLILTG NFSLAQEILA  480
RLNHQLSLPA KPLIRAALYV KEALQMLLLT GNPVAAPPSK TLTPYDVVHK MNAYKLFSEV  540
SPITQFTNFT CTQAILEALD DADAIHIIDF DIGCGAQWAS LIQELPLRKR GAPSLKITAL  600
APSSSHPFEL GLIRENLMQF ANDIGIAFDL QVVNLDLFDP SSCSLPNFRT SEDESIAVSI  660
PIWSSSNRPS MLPPILEFIK QCSPKIVVSL DRVFDRCDVP FPQHLVHTLD WCTNFLESLD  720
GLNVASDIVN KVEKFFVQPR IENTVLGRVH FPEKMPHWKN LFASAGFSPM QFSNFTETQA  780
DYVVKRTPGR GFHVEKRQAS LVLSWQRREL VAASAWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2447481721375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853011.10.0scarecrow-like protein 6
TrEMBLA0A0K9RSB80.0A0A0K9RSB8_SPIOL; Uncharacterized protein
STRINGXP_010695123.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-91GRAS family protein