PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_033280_ssaz.t2

Common Name

SOVF_033280

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 427aa MW: 46715.8 Da PI: 6.6251

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_033280_ssaz.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.128	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.48E-5	288	332	No hit	No description
SuperFamily	SSF47459	6.28E-10	288	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-7	288	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MMAGNPSNWW SMHSNLRSSS SPTDHHQHNH HQQHEDEEED TNNLLISQTH PSNSLLPLQF 60 LHGSSHSSSS SSSLLPFIAS AADPHAHDFP HSWSQLLLGG MANEQEERFS SSEFEATRVI 120 NGGLQQIDVK HELSSQSNNH TTTNNNNNNN NNNNNNMELY GNQYHDQEQE VSVGVSDRVA 180 AAAVAVATTT AAANWTTHQI MPASLSPKSC ITSLSSSNNH NHNHNHNHNN SNMLDFSTNN 240 KRTLEAESHQ HADLTTTNSE QCNSTATNGG VQPPKKPRVQ PSSTPPLKVR KEKLGDRITS 300 LHQLVSPFGK TDTASVLLEA IGYIRFLQGQ IQALSSPYLG NNNASSKNNQ HSIHGERNCL 360 FPDHPGQLLN DSCLKRRGAA YQEDNKDAAS KDLLKSRGLC LVPISCTQLI GSDNGADYWA 420 QSLGGGF

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MMAGNPSNWW SMHSNLRSSS SPTDHHQHNH HQQHEDEEED TNNLLISQTH PSNSLLPLQF  60
LHGSSHSSSS SSSLLPFIAS AADPHAHDFP HSWSQLLLGG MANEQEERFS SSEFEATRVI  120
NGGLQQIDVK HELSSQSNNH TTTNNNNNNN NNNNNNMELY GNQYHDQEQE VSVGVSDRVA  180
AAAVAVATTT AAANWTTHQI MPASLSPKSC ITSLSSSNNH NHNHNHNHNN SNMLDFSTNN  240
KRTLEAESHQ HADLTTTNSE QCNSTATNGG VQPPKKPRVQ PSSTPPLKVR KEKLGDRITS  300
LHQLVSPFGK TDTASVLLEA IGYIRFLQGQ IQALSSPYLG NNNASSKNNQ HSIHGERNCL  360
FPDHPGQLLN DSCLKRRGAA YQEDNKDAAS KDLLKSRGLC LVPISCTQLI GSDNGADYWA  420
QSLGGGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862869.1	0.0	transcription factor bHLH68-like
TrEMBL	A0A0K9RSK9	0.0	A0A0K9RSK9_SPIOL; Uncharacterized protein
STRING	XP_010691374.1	1e-177	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-65	bHLH family protein