PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_033280_ssaz.t1

Common Name

SOVF_033280

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 426aa MW: 46587.6 Da PI: 6.6251

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_033280_ssaz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.128	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-10	287	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-7	287	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-5	287	331	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MMAGNPSNWW SMHSNLRSSS SPTDHHQHNH HQQHEDEEED TNNLLISQTH PSNSLLPLQF 60 LHGSSHSSSS SSSLLPFIAS AADPHAHDFP HSWSQLLLGG MANEQEERFS SSEFEATRVI 120 NGGLQQIDVK HELSSQSNNH TTTNNNNNNN NNNNNNMELY GNQYHDQEQE VSVGVSDRVA 180 AAAVAVATTT AAANWTTHQI MPASLSPKSC ITSLSSSNNH NHNHNHNHNN SNMLDFSTNN 240 KRTLEAESHQ HADLTTTNSE CNSTATNGGV QPPKKPRVQP SSTPPLKVRK EKLGDRITSL 300 HQLVSPFGKT DTASVLLEAI GYIRFLQGQI QALSSPYLGN NNASSKNNQH SIHGERNCLF 360 PDHPGQLLND SCLKRRGAAY QEDNKDAASK DLLKSRGLCL VPISCTQLIG SDNGADYWAQ 420 SLGGGF

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MMAGNPSNWW SMHSNLRSSS SPTDHHQHNH HQQHEDEEED TNNLLISQTH PSNSLLPLQF  60
LHGSSHSSSS SSSLLPFIAS AADPHAHDFP HSWSQLLLGG MANEQEERFS SSEFEATRVI  120
NGGLQQIDVK HELSSQSNNH TTTNNNNNNN NNNNNNMELY GNQYHDQEQE VSVGVSDRVA  180
AAAVAVATTT AAANWTTHQI MPASLSPKSC ITSLSSSNNH NHNHNHNHNN SNMLDFSTNN  240
KRTLEAESHQ HADLTTTNSE CNSTATNGGV QPPKKPRVQP SSTPPLKVRK EKLGDRITSL  300
HQLVSPFGKT DTASVLLEAI GYIRFLQGQI QALSSPYLGN NNASSKNNQH SIHGERNCLF  360
PDHPGQLLND SCLKRRGAAY QEDNKDAASK DLLKSRGLCL VPISCTQLIG SDNGADYWAQ  420
SLGGGF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862869.1	0.0	transcription factor bHLH68-like
TrEMBL	A0A0K9RUD3	0.0	A0A0K9RUD3_SPIOL; Uncharacterized protein
STRING	XP_010691374.1	1e-179	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-66	bHLH family protein