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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_033230_yrso.t1 | ||||||||
Common Name | SOVF_033230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 209aa MW: 23811.2 Da PI: 8.7829 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.2 | 2.2e-15 | 180 | 207 | 2 | 29 |
--SS-EEEEEEE--TT-SS-EEEEEE-S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCts 29 +Dgy+WrKYGqK+ +++++pr+Y++C++ Sp_033230_yrso.t1 180 KDGYQWRKYGQKVTRDNPCPRAYFKCSF 207 8*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-14 | 168 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.802 | 174 | 209 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-13 | 176 | 207 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-6 | 179 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-11 | 180 | 207 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDYSTSWLSH SSPSLDISNA NTLRLFDDAP VRDTNIFKQD PSPPRPPSTN LWHKDESGAL 60 VEELKRVNAE NKRLTEMLTV VCENYNELKR QLVDHMSKQS SSNNEITKKR KLDNNNNNNN 120 NNNNNNNNGL VVRTNNNNNG ESSSSDEEDS YGKPKEETIK AKITRVAVRT QASDSTLILK 180 DGYQWRKYGQ KVTRDNPCPR AYFKCSFAP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB081952 | 0.0 | AB081952.1 Spinacia oleracea Spwrky-1 mRNA for WRKY transcription factor 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021866331.1 | 1e-153 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0K9RUC8 | 1e-152 | A0A0K9RUC8_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010691587.1 | 7e-88 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 7e-37 | WRKY DNA-binding protein 40 |