PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_032730_jqrg.t1

Common Name

SOVF_032730

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 976aa MW: 108690 Da PI: 8.1514

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_032730_jqrg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	130	149	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+fa+ G C++G++C+F H Sp_032730_jqrg.t1 130 ICRDFAA-GRCRRGNSCHFLH 149 7****.*********** PP
2	zf-CCCH	22.6	1.9e-07	197	217	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd+C++ H+ Sp_032730_jqrg.t1 197 ICSEFLK-GRCRRGDSCRYVHD 217 6****.***********7 PP
3	zf-CCCH	23.9	7.1e-08	282	303	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +C+ffa+ G C+ G+rCkF+H Sp_032730_jqrg.t1 282 ETPCKFFAA-GNCRNGNRCKFSH 303 6799999.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.3E-4	125	151	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.727	125	152	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-6	129	151	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	130	149	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	192	217	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.018	192	219	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.2E-5	193	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	197	218	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-4	197	217	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-6	279	305	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.591	279	306	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	279	304	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-5	282	303	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	284	307	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MSGSSKRRHS KWDNKDSEAL PEDFYDRAQT RRPREPLSPG RGSRRHDSRS KESTMTWDRE 60 GNCTQISPGL DEWRPRHSSR SPRNGWSRSH RTSQSRSRSR SRSQSPAPNF RREPTSIDRS 120 RSRSGVSAQI CRDFAAGRCR RGNSCHFLHQ DEVYDNRRLD CSSPDDWESR RQRTGSSRYS 180 PDDTKDSAIR TEKSAHICSE FLKGRCRRGD SCRYVHDDSA VDVFEKGAVE DVYRNRNHDL 240 RSRDIYPDHE HRSRDSYRDL DHRRRDTYTE RNHEFEPPKR GETPCKFFAA GNCRNGNRCK 300 FSHQVQESFS PDSRRSRGDR RYPDHKSEGG QVWDGPKWSD ATTVSAVQGR VEDKNGKKEA 360 NNTVRNQGDE RGPDHKYEGD RAWDGPSWSD VTTVPNVPAV HGWEEDKNKI AEVAKDVTRL 420 RPGDDCWNHD MHDIKQQEDT SSSISKPEIQ DKKQPLEWTM ENNVPDMGLS APRNTEYFSG 480 DIEISPRGIK QQGVNSSTSQ TPSISSSVYP SVQKDVTGDA SYEKHHQAEL QKQKVFHDPS 540 AEQNPNYKDN KSMLYSGERR DIVLDHDGSC MIQNQPLNIP PQGQGIFQHG QSVNVHPMST 600 VSPPLGQSQP LFPSYPPPGQ SQPSFPSYPP PGQSQPSLPS HPPPGQSHPS LPSHPPPGQS 660 QPSLPSHPPP GQSHPSLPSH PPPGHGHNQP SLPTHPPPGQ SQLSLPSYGL PLHPPPGQSQ 720 LSLPPQPPRG ETMQVSHDPS SAFLENIVAV ADGSHVVSLA SSAIAPVSST EHSTVSNEQL 780 AQLSHLTASL TQLLENRQQS SQFSTAVTPH GLSNLPDIAA AHVPSVSAAI IHANQGPEVL 840 KPYDPHEGGI VAASKDEKNG KTTAEGTNKA PENGRQDTGD DDGGDDDKKL KDTKGLRAFK 900 FALAEFVKEI LKPSWKDGQV SKDAYKTIVK KVVDKVMETL GPQIPQTKEK IDMYLSCSKP 960 KIEKLVQAYV GKHQKS

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MSGSSKRRHS KWDNKDSEAL PEDFYDRAQT RRPREPLSPG RGSRRHDSRS KESTMTWDRE  60
GNCTQISPGL DEWRPRHSSR SPRNGWSRSH RTSQSRSRSR SRSQSPAPNF RREPTSIDRS  120
RSRSGVSAQI CRDFAAGRCR RGNSCHFLHQ DEVYDNRRLD CSSPDDWESR RQRTGSSRYS  180
PDDTKDSAIR TEKSAHICSE FLKGRCRRGD SCRYVHDDSA VDVFEKGAVE DVYRNRNHDL  240
RSRDIYPDHE HRSRDSYRDL DHRRRDTYTE RNHEFEPPKR GETPCKFFAA GNCRNGNRCK  300
FSHQVQESFS PDSRRSRGDR RYPDHKSEGG QVWDGPKWSD ATTVSAVQGR VEDKNGKKEA  360
NNTVRNQGDE RGPDHKYEGD RAWDGPSWSD VTTVPNVPAV HGWEEDKNKI AEVAKDVTRL  420
RPGDDCWNHD MHDIKQQEDT SSSISKPEIQ DKKQPLEWTM ENNVPDMGLS APRNTEYFSG  480
DIEISPRGIK QQGVNSSTSQ TPSISSSVYP SVQKDVTGDA SYEKHHQAEL QKQKVFHDPS  540
AEQNPNYKDN KSMLYSGERR DIVLDHDGSC MIQNQPLNIP PQGQGIFQHG QSVNVHPMST  600
VSPPLGQSQP LFPSYPPPGQ SQPSFPSYPP PGQSQPSLPS HPPPGQSHPS LPSHPPPGQS  660
QPSLPSHPPP GQSHPSLPSH PPPGHGHNQP SLPTHPPPGQ SQLSLPSYGL PLHPPPGQSQ  720
LSLPPQPPRG ETMQVSHDPS SAFLENIVAV ADGSHVVSLA SSAIAPVSST EHSTVSNEQL  780
AQLSHLTASL TQLLENRQQS SQFSTAVTPH GLSNLPDIAA AHVPSVSAAI IHANQGPEVL  840
KPYDPHEGGI VAASKDEKNG KTTAEGTNKA PENGRQDTGD DDGGDDDKKL KDTKGLRAFK  900
FALAEFVKEI LKPSWKDGQV SKDAYKTIVK KVVDKVMETL GPQIPQTKEK IDMYLSCSKP  960
KIEKLVQAYV GKHQKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854748.1	0.0	zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_021854749.1	0.0	zinc finger CCCH domain-containing protein 38-like isoform X1
TrEMBL	A0A0K9RSN7	0.0	A0A0K9RSN7_SPIOL; Uncharacterized protein
STRING	XP_010680246.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-13	C3H family protein