PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_032720_pyix.t1
Common NameSOVF_032720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 234aa    MW: 26921.4 Da    PI: 8.9957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_032720_pyix.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.5e-08133173954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P        K++ a++L +A++Y+k L
  Sp_032720_pyix.t1 133 ARHRRERISEKIRVLQRLVPGG-----VKMDTASMLDEAIRYVKFL 173
                        699*****************96.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.621124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-13129184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-12129181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-8130178No hitNo description
SMARTSM003531.0E-12130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5134173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEEDHHRRHR HHHPHPHPHQ QHQNHHVHPL LDPVWPTYNN LPTPHPSPPS IIIPPSNNSN  60
NTSSLIIKPT PLQEQVVLEE DDHEFEEEEE LGAMKEMMYR IAVMQPVDID PATIRKPKRR  120
NVRISNDPQS VAARHRRERI SEKIRVLQRL VPGGVKMDTA SMLDEAIRYV KFLKRQIRQL  180
HPAGSSNNHH PPPVPTLSPS DWPPPPPPSA SKAVLIRNNH HHNHEGVIFQ HGGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854753.11e-168transcription factor HEC3
TrEMBLA0A0K9RSP81e-166A0A0K9RSP8_SPIOL; Uncharacterized protein
STRINGXP_010680245.15e-70(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.18e-47bHLH family protein