PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_031720_pwzj.t1
Common NameSOVF_031720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 268aa    MW: 28444 Da    PI: 9.2876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_031720_pwzj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062107129123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ Cgk F +   L  H  +H
  Sp_031720_pwzj.t1 107 YKCSVCGKAFGSYQALGGHKASH 129
                        9*********9999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.46E-10106182No hitNo description
PfamPF139127.6E-14106131IPR007087Zinc finger, C2H2
SMARTSM003550.012107129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4107129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
PfamPF139124.6E-11159184IPR007087Zinc finger, C2H2
SMARTSM003551.8160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058160182IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALEALNSPT TPHAPFKFEE RSFDHWVKKK RSKRSRNEMS PPSTTTTTTA AADSPLSEEE  60
YLAFCLLMLA KGGAAPVTTS SRVTPTPLKT ERLFLSGGDQ SNRSLVYKCS VCGKAFGSYQ  120
ALGGHKASHR KPATEDDKPS AAVTSSATTT TSAGAGGKTH ECSICHKCFP TGQALGGHKR  180
CHYEGSIGGG AAKSGSGVTG SEGVGSSLTM SHGGSEKRDF DLNLPALPEF LPVDFFKIRG  240
QTVFSRDEEV ESPHPLKKPR LVLTGPKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859335.10.0zinc finger protein ZAT10-like
TrEMBLA0A0K9RUY30.0A0A0K9RUY3_SPIOL; Uncharacterized protein
STRINGXP_010688220.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-42salt tolerance zinc finger