PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_030320_sppf.t2
Common NameSOVF_030320
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 288aa    MW: 32260.7 Da    PI: 6.0964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_030320_sppf.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-2978136259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ve+s+ dp+++++tY+ +Hnh+
  Sp_030320_sppf.t2  78 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVEKSRADPNTLVVTYSYDHNHP 136
                        69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-3071138IPR003657WRKY domain
SuperFamilySSF1182902.09E-2573138IPR003657WRKY domain
SMARTSM007741.3E-3477137IPR003657WRKY domain
PROSITE profilePS5081131.50278138IPR003657WRKY domain
PfamPF031066.3E-2579136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEGSLSELYG NVKYDMDMDM EITSDNSGDN SPFSTTFSAC ASISSPKRSR RAIQKKVVTF  60
PLKEVQGSRF KGECTPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVEKSRA  120
DPNTLVVTYS YDHNHPWPIS RNHHQNRHNN VVAAAATSSA PTTAENNNNS TRVVSSTCTT  180
NNKSMQTKIE NNHVAFQQNN DEHDQLLPPT DELAWFTSDH QILENNLLFS NLNDLDMEKI  240
FPMREEDDSL FADLEELPEC SVVFRRAAGV VAVEECNLPP PTWCGATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-18781381779Disease resistance protein RRS1
5w3x_D2e-18781381779Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842439.10.0probable WRKY transcription factor 65 isoform X1
TrEMBLA0A0K9RTN90.0A0A0K9RTN9_SPIOL; Uncharacterized protein
STRINGXP_010686240.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-55WRKY DNA-binding protein 65