PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_030320_sppf.t1
Common NameSOVF_030320
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 287aa    MW: 32173.6 Da    PI: 6.0964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_030320_sppf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.8e-2977135259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ve+s+ dp+++++tY+ +Hnh+
  Sp_030320_sppf.t1  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVEKSRADPNTLVVTYSYDHNHP 135
                        69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-3070137IPR003657WRKY domain
SuperFamilySSF1182902.09E-2572137IPR003657WRKY domain
SMARTSM007741.3E-3476136IPR003657WRKY domain
PROSITE profilePS5081131.50277137IPR003657WRKY domain
PfamPF031066.3E-2578135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEGSLSELYG NVKYDMDMDM EITSDNSGDN SPFSTTFSAC ASISSPKRRR AIQKKVVTFP  60
LKEVQGSRFK GECTPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVEKSRAD  120
PNTLVVTYSY DHNHPWPISR NHHQNRHNNV VAAAATSSAP TTAENNNNST RVVSSTCTTN  180
NKSMQTKIEN NHVAFQQNND EHDQLLPPTD ELAWFTSDHQ ILENNLLFSN LNDLDMEKIF  240
PMREEDDSLF ADLEELPECS VVFRRAAGVV AVEECNLPPP TWCGATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-18771371779Disease resistance protein RRS1
5w3x_D2e-18771371779Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842440.10.0probable WRKY transcription factor 65 isoform X2
TrEMBLA0A0K9RVF90.0A0A0K9RVF9_SPIOL; Uncharacterized protein
STRINGXP_010686240.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-53WRKY DNA-binding protein 65