PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_030140_qjuy.t1
Common NameSOVF_030140
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 407aa    MW: 45456.6 Da    PI: 6.5263
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_030140_qjuy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.21.6e-32273328156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm v+gLt+++vkSHLQkYRl+
  Sp_030140_qjuy.t1 273 KQRRCWSPELHRRFVDALTQLGGPQVATPKQIRELMRVDGLTNDEVKSHLQKYRLH 328
                        79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.056270330IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29271331IPR009057Homeodomain-like
SuperFamilySSF466891.73E-17271331IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26273328IPR006447Myb domain, plants
PfamPF002495.9E-7275326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGLVCPELSL DLKPSYVSET INGFLGEVSM IGDSSERLDK VDDFVRKLEA ELNKIEVFKR  60
ELPLCMLLLK DAISYLKQES SQYKTKNAHQ PVLEEFIPMK KDSIRDENTQ LSKTGEEASR  120
KDKTNWMSSV QLWNTDGLTT NTIAPHLIRN SNQNQRQNYV SESPKEDEKR NQIVGGNLYD  180
PCKIRTESKG FAPLVHNYPT TTTTFPELRR KVDKDDVKVS GLTLVVPGMN NNNPEEDSVT  240
RVFNPTLGGN RALNSSSPAS SGRLSHQQSS ARKQRRCWSP ELHRRFVDAL TQLGGPQVAT  300
PKQIRELMRV DGLTNDEVKS HLQKYRLHTR RVPNDSGTPG NKSGQDLSGS WTAQDQYSES  360
SKPSSSQSAS PEGPLQFPGL TGETSTTGGD SMDDDDDEKS ESHIWKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851312.10.0transcription factor HHO5-like
TrEMBLA0A0K9RTL50.0A0A0K9RTL5_SPIOL; Uncharacterized protein
STRINGXP_010691017.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-52G2-like family protein