PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_029660_auco.t1
Common NameSOVF_029660
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 336aa    MW: 37819.3 Da    PI: 6.0254
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_029660_auco.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.2e-321064155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprl+WtpeLH+rFveav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQk+Rl
  Sp_029660_auco.t1 10 KPRLKWTPELHQRFVEAVHQLGGADKATPKGLMRVMGIPGLTLYHLKSHLQKFRL 64
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-30864IPR009057Homeodomain-like
SuperFamilySSF466892.69E-16965IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-221065IPR006447Myb domain, plants
PfamPF002496.1E-81262IPR001005SANT/Myb domain
PfamPF143799.8E-22117164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNLVLSTDAK PRLKWTPELH QRFVEAVHQL GGADKATPKG LMRVMGIPGL TLYHLKSHLQ  60
KFRLGKNYQH SQKSETCSES KPDDTDCEES HGIDTLNLFV EEKEINDPTQ EQINENVQIS  120
KTIKIQMEVQ RKLHEQIEVQ RHLQLRIEAQ GKYLQTVLKK AQETLSSYNC SADGVEHAKA  180
ELSQLVSMVS SSSFSGLTEV TDLSLEQKQT MRHTGYSVES SLTSSESSGR REEEKETKRE  240
NEEITTDDKG SQENCVFILP LLELDQSRTK VGPGSRKRMS NCVEQTGSKK SSCNGNGNGL  300
RKFGVLETFD LNSSSQCENN ELDFGLRQPI DLNSKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-201066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-201066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-201066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-201066157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842981.10.0myb family transcription factor PHL8-like isoform X2
SwissprotQ9SQQ91e-72PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0K9RVJ20.0A0A0K9RVJ2_SPIOL; Uncharacterized protein
STRINGXP_010683165.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.34e-64G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]