PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_029270_fytx.t1
Common NameSOVF_029270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 273aa    MW: 31334.5 Da    PI: 8.9714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_029270_fytx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-54101351128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+ +yLk+++ ++++++ ++i+evdiyk++Pw+Lp k++ +ekewyfF++rd+ky++g r+nrat sgyWkatg+dk++
  Sp_029270_fytx.t1  10 LPPGFRFHPTDEELIIHYLKNQAMSRPCPV-SIIPEVDIYKFDPWQLPDKAEFGEKEWYFFTPRDRKYPNGIRPNRATLSGYWKATGTDKAI 100
                        79****************************.89***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s + + vg+kk Lvfykgr pkg+ktdW+mheyrl
  Sp_029270_fytx.t1 101 YS-GAKYVGIKKALVFYKGRPPKGSKTDWIMHEYRL 135
                        **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-667162IPR003441NAC domain
PROSITE profilePS5100561.33110162IPR003441NAC domain
PfamPF023653.2E-2711135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDAKRCSSSL PPGFRFHPTD EELIIHYLKN QAMSRPCPVS IIPEVDIYKF DPWQLPDKAE  60
FGEKEWYFFT PRDRKYPNGI RPNRATLSGY WKATGTDKAI YSGAKYVGIK KALVFYKGRP  120
PKGSKTDWIM HEYRLTEAKH QPIKQNGSMR LDDWVLCRIY KKRHVVRAEE RTEELSSQQE  180
QVSMIGGAND VTITSNQNQQ EMKFPRTQSL SYLLDLDYLG PIAHLLNDNN SSFDIQTSMG  240
INAGFDPHVG PLSSYPNIGL SCHQTNGNQS YYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-74916316166NO APICAL MERISTEM PROTEIN
1ut4_B6e-74916316166NO APICAL MERISTEM PROTEIN
1ut7_A6e-74916316166NO APICAL MERISTEM PROTEIN
1ut7_B6e-74916316166NO APICAL MERISTEM PROTEIN
3swm_A7e-74916319169NAC domain-containing protein 19
3swm_B7e-74916319169NAC domain-containing protein 19
3swm_C7e-74916319169NAC domain-containing protein 19
3swm_D7e-74916319169NAC domain-containing protein 19
3swp_A7e-74916319169NAC domain-containing protein 19
3swp_B7e-74916319169NAC domain-containing protein 19
3swp_C7e-74916319169NAC domain-containing protein 19
3swp_D7e-74916319169NAC domain-containing protein 19
4dul_A6e-74916316166NAC domain-containing protein 19
4dul_B6e-74916316166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864198.10.0NAC transcription factor 29-like
RefseqXP_021864199.10.0NAC transcription factor 29-like
SwissprotK4BNG71e-119NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A0K9RTR30.0A0A0K9RTR3_SPIOL; Uncharacterized protein
STRINGXP_010683140.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-105NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]