PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_028140_eanm.t1
Common NameSOVF_028140
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 398aa    MW: 44194.6 Da    PI: 7.1929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_028140_eanm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07112132526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C+ f+r G C+ Gd+C +aHg
  Sp_028140_eanm.t1 112 ACPEFRR-GSCRKGDSCEYAHG 132
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.5785996IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206108134IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5112132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4112134IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.024142166IPR000571Zinc finger, CCCH-type
SMARTSM003569.1142165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMMIHRQHPT VDIPPWDPPY DDPSTPIFSP QTNDYFAALK RYLPSSEFDD SDNESSDLPF  60
DSFTCDNFRM YEFKIRKCVR GRSHDWTECP YAHPGEKARR RDPRKFHYSG TACPEFRRGS  120
CRKGDSCEYA HGVFECWLHP ARYRTQPCKD GPHCKRRVCF FAHSPEQLRV LPSLSTESPP  180
IRLGYDSVDE VGLGGGSGLS SYTQEQLRVL PPLPESPPSY GRLGSESMNG FVGSPPMKLG  240
FNGYSPTSVF DSFPDSPPMS PRYASPNSVN ELSNAMRGLQ LGKLGVGPRN LWGVQMGSPR  300
SPRGFVCGSS CSGVSGGLCG GGSLPTTPTR NPTRSGLGLF DLWDVNIEEE VPMERVESGN  360
GLRARMYAKL CKENSLDHDR VNSVSPGPDF GWVSELIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849619.10.0zinc finger CCCH domain-containing protein 49-like
TrEMBLA0A0K9RVW90.0A0A0K9RVW9_SPIOL; Uncharacterized protein
STRINGXP_010668905.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.17e-89C3H family protein