PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_027620_xdmn.t1 | ||||||||
Common Name | SOVF_027620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | SRS | ||||||||
Protein Properties | Length: 218aa MW: 23804.4 Da PI: 8.9474 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 184.8 | 3.4e-57 | 11 | 157 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 ++t+sCqdCGn+ak+dC+h+RCRtCCksr+f+CathvkstWvp+a+rr rq+q+++++ + ++ + ++ ++ +ls+ + ++ Sp_027620_xdmn.t1 11 TNTTSCQDCGNKAKRDCEHTRCRTCCKSRSFQCATHVKSTWVPVARRRARQRQHHQQHPQLR--LSATSLDHFNQY-LPLPLSLSNIHH-HT 98 56789*********************************************988877543332..333333333333.233333333332.33 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ le ++P+ev+s+a frc+rvss d+ +++aYqt++s+gGhvfkG+LydqG+ Sp_027620_xdmn.t1 99 PTSAGLEGGNFPAEVNSSATFRCIRVSSEDNVVDQYAYQTSISVGGHVFKGVLYDQGPT 157 3456889999***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.4E-55 | 13 | 157 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.6E-24 | 15 | 57 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.8E-22 | 109 | 156 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRSSSGGSSS TNTTSCQDCG NKAKRDCEHT RCRTCCKSRS FQCATHVKST WVPVARRRAR 60 QRQHHQQHPQ LRLSATSLDH FNQYLPLPLS LSNIHHHTPT SAGLEGGNFP AEVNSSATFR 120 CIRVSSEDNV VDQYAYQTSI SVGGHVFKGV LYDQGPTTAL VTTTSDHHPF NISASTVTVA 180 ATHPGGGGEN LYHPPSLYSG PSFNAFLPGM QFFPHPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849934.1 | 1e-162 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9SD40 | 1e-54 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0K9RW43 | 1e-161 | A0A0K9RW43_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690810.1 | 3e-78 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 4e-45 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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